View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_14 (Length: 417)
Name: NF13259_low_14
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 30025144 - 30024758
Alignment:
| Q |
20 |
actgcggtggtatactctcatgtaacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaacgaccaagatttctacgacgttag |
119 |
Q |
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| T |
30025144 |
actgcggtggtatactctcatgtaacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaacgaccaagatttctacgacgttag |
30025045 |
T |
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| Q |
120 |
tcttgtggacggttacaatcttccattaaccataacgccattaaatggtaacggaaaatgtgaattcgccggttgtgttagggatcttaacgtcatgtgt |
219 |
Q |
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| T |
30025044 |
tcttgtggacggttacaatcttccgttaaccataacgccattaaatggtaacggaaaatgtgaattcgccggttgtgttagggatcttaacgtcatgtgt |
30024945 |
T |
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| Q |
220 |
cccatgagccttcaagttaggtcaagtgacatgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgttgcacgggta |
319 |
Q |
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| T |
30024944 |
cccatgagccttcaagttaggtcaagtgacatgaatcaagtggtgggctgtaagagtgcttgttatgcttttaactcacctgagtattgttgcacgggta |
30024845 |
T |
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| Q |
320 |
gttatggaagcccacaggcttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatgcctttg |
406 |
Q |
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| T |
30024844 |
gttatggaagcccacaggcttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatgcctttg |
30024758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 401
Target Start/End: Complemental strand, 45273361 - 45273198
Alignment:
| Q |
238 |
aggtcaagtgacatgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgttgcacgggtagttatggaagcccacagg |
337 |
Q |
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| T |
45273361 |
aggtcacgtgacaagaagcacgtggtgggttgtagaagtgcttgtgctgctttcaactctcctaggtattgctgtactggtaactttggtaccccacaga |
45273262 |
T |
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| Q |
338 |
cttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatgc |
401 |
Q |
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| T |
45273261 |
cctgcaagcccactgcttattcaagaatcttcaaaactgcttgcccaaaggcttactcttatgc |
45273198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 27975688 - 27975645
Alignment:
| Q |
100 |
caagatttctacgacgttagtcttgtggacggttacaatcttcc |
143 |
Q |
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| T |
27975688 |
caagatttctacgacgtgagtctcgtcgacggttacaatcttcc |
27975645 |
T |
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