View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_15 (Length: 413)
Name: NF13259_low_15
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 395
Target Start/End: Complemental strand, 4364918 - 4364527
Alignment:
| Q |
6 |
gtcgaagaatatggtccaatgaagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
105 |
Q |
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| T |
4364918 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4364819 |
T |
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| Q |
106 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatgcaaatatctatcactcttgttaaacaaaatattcaactagacc--nnnnnnnnnnnnt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4364818 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatggaaatatctatcactcttgttaaacaaaatattcaactagaccaaaaataaaaaaaat |
4364719 |
T |
|
| Q |
204 |
caaagactaattttgttt-tattgcatctctttagcattcctctaccaccatgggtgctagaagaaataaggaagaaccctgagctagtttacacagaca |
302 |
Q |
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||||||||||||| |||| |||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
4364718 |
caaagactaatttggtttgtattgcat-tttatagcattcctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagaca |
4364620 |
T |
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| Q |
303 |
aattagggaggaggaatccagaatacatttcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgatt |
395 |
Q |
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| T |
4364619 |
aattaggaagaagaaatccagaatacatctcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgatt |
4364527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 395
Target Start/End: Complemental strand, 4372511 - 4372119
Alignment:
| Q |
6 |
gtcgaagaatatggtccaatgaagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
105 |
Q |
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| T |
4372511 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4372412 |
T |
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| Q |
106 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatgcaaatatctatcactcttgttaaacaaaatattcaactagacc---nnnnnnnnnnnn |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372411 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatggaaatatctatcactcttgttaaacaaaatattcaactagaccaaaaataaaaaaaaa |
4372312 |
T |
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| Q |
203 |
tcaaagactaattttgttt-tattgcatctctttagcattcctctaccaccatgggtgctagaagaaataaggaagaaccctgagctagtttacacagac |
301 |
Q |
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| T |
4372311 |
tcaaagactaatttggtttgtattgcat-tttatagcattcctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagac |
4372213 |
T |
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| Q |
302 |
aaattagggaggaggaatccagaatacatttcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgatt |
395 |
Q |
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| T |
4372212 |
aaattaggaagaagaaatccagaatacatctcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgatt |
4372119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 41042653 - 41042773
Alignment:
| Q |
27 |
aagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtcttttcatcaatgtggtggaaatg |
126 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
41042653 |
aagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttgttatgtcttttcatcagtgtggaggaaatg |
41042752 |
T |
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| Q |
127 |
ttggtgactcttgcaggtatg |
147 |
Q |
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|||| || || |||||||||| |
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| T |
41042753 |
ttggagattcctgcaggtatg |
41042773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 41042872 - 41043016
Alignment:
| Q |
240 |
ttcctctaccaccatgggtgctagaagaaataaggaagaaccctgagctagtttacacagacaaattagggaggaggaatccagaatacatttcattggg |
339 |
Q |
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|||||||||| ||||||||| | ||||| || || ||||||||||| | ||||||||||||| || ||||||||| ||||| || ||||| |||||||| |
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| T |
41042872 |
ttcctctacctccatgggtgatggaagagatcagcaagaaccctgacattgtttacacagacagatcagggaggagaaatcctgagtacatatcattggg |
41042971 |
T |
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| Q |
340 |
atgtgattcagtgcctgttctagcaggaagaactccacttcaagt |
384 |
Q |
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|||||||||||||||||||||| |||||||||||| || ||||| |
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| T |
41042972 |
atgtgattcagtgcctgttctaaaaggaagaactcccctccaagt |
41043016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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