View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_16 (Length: 398)
Name: NF13259_low_16
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 136 - 384
Target Start/End: Original strand, 36341868 - 36342123
Alignment:
| Q |
136 |
ttacttcgtttcttgtttttgtgagtccatttttggcagaagcataggccaaattggaaacaaagaggaagcatgcgatattctcaattatatacaggtt |
235 |
Q |
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| T |
36341868 |
ttacttcgtttcttgtttttgtgagtccatttttggcagaagcataggccaaattggaaacaaagaggaagcatgtgatattctcaattatatacaggtt |
36341967 |
T |
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| Q |
236 |
acaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatattactaaccgaaaatctatagaaaa |
335 |
Q |
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| T |
36341968 |
acaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatattgctaactgaaaatctatagaaaa |
36342067 |
T |
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| Q |
336 |
attgcatcag-------tgatgagcaattgaattctctaattgaaagttaaatatt |
384 |
Q |
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| T |
36342068 |
actgcatcagtgatgactgatgagcaattgaattctctaattcaaagttaaatatt |
36342123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36341020 - 36341068
Alignment:
| Q |
17 |
attatattgcatagaagagtgatttcaacaaatttattgactatagcgt |
65 |
Q |
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| T |
36341020 |
attatattgcatagaagagtgatttcaacaaattcattgactatagcgt |
36341068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 224 - 375
Target Start/End: Original strand, 39865270 - 39865421
Alignment:
| Q |
224 |
tatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatattactaaccgaaa |
323 |
Q |
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| T |
39865270 |
tatatacaggttacaacaataacttggctgatcgcaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatatcgctaactgaaa |
39865369 |
T |
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| Q |
324 |
atctatagaaaaattgcatcagtgatgagcaattgaattctctaattgaaag |
375 |
Q |
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| T |
39865370 |
atctatacaataactgcatcagtaaccggcaattgaattatctaattcaaag |
39865421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 39865101 - 39865175
Alignment:
| Q |
136 |
ttacttcgtttcttgtttttgtgagtccatttttggcagaagcataggccaaattggaaacaaagaggaagcatg |
210 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||||| ||||| |
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| T |
39865101 |
ttacttcatttcttgtttttgtgtgtccatttttggcagaagcagatgccaaactggaaacaaagaggaggcatg |
39865175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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