View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13259_low_17 (Length: 364)
Name: NF13259_low_17
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 349
Target Start/End: Original strand, 10337768 - 10338097
Alignment:
| Q |
20 |
actcctaacagcactcggaggccgtctcaacggcaaactaaccggaaaaaccacttacaacaatcaacctttctcgggttcaataaaaagaagaacaggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337768 |
actcctaacagcactcggaggccgtctcaacggcaaactaaccggaaaaaccacttacaacaatcaacctttctcgggttcaataaaaagaagaacaggt |
10337867 |
T |
|
| Q |
120 |
tttgtagctcaagatgatgttctttaccctcacttaaccgttaccgaaacactagtgttcactgcacttttgaggcttcctaaaaccttaacaagagatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337868 |
tttgtagctcaagatgatgttctttaccctcacttaaccgttaccgaaacactagtgttcactgcacttttgaggcttcctaaaaccttaacaagagatg |
10337967 |
T |
|
| Q |
220 |
aaaaagttgtgcatgtagagagagtgatttctgagttaggactaaataattgtaggaatagtatgattggaggaccacttttgagaggtatatcaggtgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337968 |
aaaaagttgtgcatgtagagagagtgatttctgagttaggactaaataattgtaggaatagtatgattggaggaccacttttgagaggtatatcaggtgg |
10338067 |
T |
|
| Q |
320 |
tgagaaaaggagagtgagtataggacaaga |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10338068 |
tgagaaaaggagagtgagtataggacaaga |
10338097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 33718367 - 33718452
Alignment:
| Q |
102 |
ataaaaagaagaacaggttttgtagctcaagatgatgttctttaccctcacttaaccgttaccgaaacactagtgttcactgcact |
187 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||| || |||||||| || || ||||| ||||| |
|
|
| T |
33718367 |
ataaaaagaaacacaggttttgtcacacaagatgatgttctttaccctcacttaacggtaaccgaaacgcttgttttcacagcact |
33718452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University