View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13259_low_19 (Length: 349)

Name: NF13259_low_19
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13259_low_19
NF13259_low_19
[»] chr5 (20 HSPs)
chr5 (15-333)||(30241198-30241516)
chr5 (15-319)||(29854282-29854583)
chr5 (32-324)||(29873162-29873451)
chr5 (27-269)||(30207505-30207747)
chr5 (32-324)||(30061360-30061649)
chr5 (32-324)||(30337354-30337643)
chr5 (32-324)||(30750634-30750923)
chr5 (15-324)||(30676117-30676423)
chr5 (49-319)||(30401079-30401349)
chr5 (74-238)||(30520537-30520701)
chr5 (74-238)||(30560877-30561041)
chr5 (17-236)||(17417507-17417726)
chr5 (17-263)||(30476348-30476594)
chr5 (15-324)||(30712257-30712563)
chr5 (15-258)||(30436784-30437027)
chr5 (15-324)||(30484372-30484678)
chr5 (41-158)||(17983895-17984012)
chr5 (28-169)||(30330190-30330331)
chr5 (199-258)||(30329730-30329789)
chr5 (180-250)||(17984020-17984090)
[»] chr3 (1 HSPs)
chr3 (15-269)||(25292828-25293082)
[»] chr1 (2 HSPs)
chr1 (15-250)||(7100392-7100627)
chr1 (15-250)||(7580619-7580854)
[»] chr4 (3 HSPs)
chr4 (32-324)||(20295411-20295700)
chr4 (40-309)||(52352955-52353223)
chr4 (82-250)||(13617637-13617805)
[»] chr7 (1 HSPs)
chr7 (15-324)||(26708303-26708609)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 30241516 - 30241198
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241516 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 30241417  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||  ||||||    
T  30241416 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaactggataatcttctttttatcgtcttctcgtccaaacacttttggttcagtaataat 30241317  T
Q  215 agagctggtttgacgccattcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatca 314  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  30241316 agcgctggtttgacgccattcagctacgtcatttgggctttcccgaacagttccagtaccttcctgcagaaaaaacttcttcctcctatcagcaatatca 30241217  T
Q  315 tccaacctccggttaatct 333  Q
    |||||||||| ||||||||    
T  30241216 tccaacctcccgttaatct 30241198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 29854282 - 29854583
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||| |||  ||| |||||||| ||||||  ||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  29854282 acccaaatttttttatcaaaattgccactcaccctaacatcattgtagaccaattgaagaagagttgtttttccaacaccacctaaaccaaaaatgggat 29854381  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    ||| |||||||||||| |||||| | | ||||||||||||||||   | |||||| | |||||| |||||||||||||||||  |||||||| |||||||    
T  29854382 agacggaaaggaagtctgagtccctcgtttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaacacttttggttcagcaataat 29854481  T
Q  215 agagctggtttgacgccattcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatca 314  Q
     |||||||||||||||||||||||||||||||||| |||||||  |||| |   |||||| ||| ||||||||||||| ||||| |||||||||||||||    
T  29854482 ggagctggtttgacgccattcagctacttcatttgagctttccttaacaat---agtaccctcccgtagaaaaaacttgttcttactatcagcaatatca 29854578  T
Q  315 tccaa 319  Q
    |||||    
T  29854579 tccaa 29854583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 324
Target Start/End: Original strand, 29873162 - 29873451
Alignment:
Q  32 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcg 131  Q
    |||||||| ||||||  ||||||||||||||||| ||||||  ||||| |||||||||| ||||||||| |||| || |||||||| ||||||||||||     
T  29873162 aaaattgccactcaccctaacatcattgtagaccaattgaacgagagttgtttttccaataccacctaaaccaacaatgggatagacggaaaggaagtca 29873261  T
Q  132 gagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgcc 231  Q
    |||||| | ||||||||||||||||||   | |||||| | |||||| |||||||||||||| ||  |||||||||||||||| ||||||||||||||||    
T  29873262 gagtccctcgcttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaatacttttggttcaacaataatggagctggtttgacgcc 29873361  T
Q  232 attcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctcc 324  Q
    |||||||||||||||||| |||||||  |||| |   |||||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  29873362 attcagctacttcatttgagctttccttaacaat---agtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatctcc 29873451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 269
Target Start/End: Original strand, 30207505 - 30207747
Alignment:
Q  27 gtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaagga 126  Q
    ||||||||||||||||||||  || |||||||||||||| |||||| |||||| |||||||||| ||||||||| |||| || |||||||| ||||||||    
T  30207505 gtattaaaattgctactcaccctagcatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaacaatgggatagacggaaagga 30207604  T
Q  127 agtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttg 226  Q
    ||||||||||| | ||||||||||||||||||  ||||||||||| |||||| |||||||| ||||| ||  |||||||| ||||||||||||| |||||    
T  30207605 agtcggagtccctcgcttgggtgagaagaaactcgataatcttctctttatcatcttctcgcccaaatacttttggttcagcaataatagagctagtttg 30207704  T
Q  227 acgccattcagctacttcatttgggctttcccgaacagttcca 269  Q
    ||||||||| ||||||||| |||  ||||||| || |||||||    
T  30207705 acgccattctgctacttcaattgatctttccctaaaagttcca 30207747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 324
Target Start/End: Original strand, 30061360 - 30061649
Alignment:
Q  32 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcg 131  Q
    |||||||| ||||||  ||||||||||||||||| |||||| |||||| |||||||||| ||||||||| ||||  | |||||||| ||||||||||||     
T  30061360 aaaattgccactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtca 30061459  T
Q  132 gagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgcc 231  Q
    |||||| ||||||||||||||||||||   | |||||| | ||||||  ||||||||||||||||  |||||||| ||||||| |||| |||||| ||||    
T  30061460 gagtcccttgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcc 30061559  T
Q  232 attcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctcc 324  Q
     ||||||||||| || |||| |||||| || ||| ||   |||   ||||||| ||||||| ||||| || |||||||||||||| |||||||    
T  30061560 cttcagctacttgatctgggatttccctaagagtgcc---acccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcc 30061649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 324
Target Start/End: Complemental strand, 30337643 - 30337354
Alignment:
Q  32 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcg 131  Q
    |||||||| ||||||  ||||||||||||||||| |||||| |||||| |||||||||| ||||||||| ||||  | |||||||| ||||||||||||     
T  30337643 aaaattgccactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtca 30337544  T
Q  132 gagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgcc 231  Q
    |||||||| ||||||||||||||||||   | |||||| | ||||||  ||||||||||||||||  |||||||| ||||||| |||| |||||| ||||    
T  30337543 gagtccttcgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcc 30337444  T
Q  232 attcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctcc 324  Q
     ||||||||||| || |||| |||||| || ||||||   |||   ||||||| ||||||| ||||| |  |||||||||| ||| |||||||    
T  30337443 cttcagctacttgatctgggatttccctaagagttcc---acccatctgtagagaaaacttgttcttacgttcagcaatattatctaacctcc 30337354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 324
Target Start/End: Original strand, 30750634 - 30750923
Alignment:
Q  32 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcg 131  Q
    |||||||  ||||||  ||||||||||||||||| |||||| |||||| |||||||||| ||||||||| ||||  | |||||||| ||||||||||||     
T  30750634 aaaattgtcactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtca 30750733  T
Q  132 gagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgcc 231  Q
    |||||| ||||||||||||||||||||     |||||| | ||||||  ||||||||||||||||  |||||||| ||||||| |||| |||||| ||||    
T  30750734 gagtcccttgcttgggtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcc 30750833  T
Q  232 attcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctcc 324  Q
     ||||||||||| || |||| |||||| || ||||||   |||   ||||||| ||||||| ||||| || |||||||||||||| |||||||    
T  30750834 cttcagctacttgatctgggatttccctaagagttcc---acccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcc 30750923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 30676423 - 30676117
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    |||||||||||  ||| ||||| || ||||||  ||||||||||| ||| | |||||| |||||| |||||||||| ||||||||| ||||||| |||||    
T  30676423 acccaaacttttttatcaaaatggccactcaccctaacatcattgaagatcaattgaacaagagttgtttttccaataccacctaaaccaaaaatgggat 30676324  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    |||  |||| |||||| |||||||| || |||||||||||||||  || |||||| | || |||  ||||||||||||||||  ||| |||| |||||||    
T  30676323 agacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttcttgatcaacttctcgtccaaacacttttgattcagcaataat 30676224  T
Q  215 agagctggtttgacgccattcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatca 314  Q
     |||| |||||| |||| ||||||||||| || |||| |||||| || ||||||   |||   ||||||| ||||||| ||||| || ||||||||||||    
T  30676223 tgagccggtttggcgcccttcagctacttgatctgggatttccctaagagttcc---acccatctgtagagaaaacttgttcttactttcagcaatatca 30676127  T
Q  315 tccaacctcc 324  Q
    || |||||||    
T  30676126 tctaacctcc 30676117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 49 - 319
Target Start/End: Original strand, 30401079 - 30401349
Alignment:
Q  49 taacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggt 148  Q
    ||||||||||||||||| |||||| |||||| ||||| |||| ||||||||| |||| || ||| |||| |||||||||||| |||||| | || |||||    
T  30401079 taacatcattgtagaccaattgaacaagagttgttttaccaataccacctaaaccaacaatggggtagacggaaaggaagtcagagtccctcgcatgggt 30401178  T
Q  149 gagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgccattcagctacttcattt 248  Q
    ||||||||||   | |||||| | |||||| |||| ||||||||||||   ||||| | ||||||| ||| || |||||||||||||| ||||||||| |    
T  30401179 gagaagaaactcaaaaatcttttctttatcatcttttcgtccaaacacttctggtttagcaataatggagttgatttgacgccattcatctacttcatct 30401278  T
Q  249 gggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaa 319  Q
    | |||||||| ||||  | ||||||| ||  |||||| ||| || |||||  |||||||||||||||||||    
T  30401279 gagctttccctaacatatacagtaccatctcgtagaagaaatttgttcttaatatcagcaatatcatccaa 30401349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 30520701 - 30520537
Alignment:
Q  74 aagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttcttt 173  Q
    |||||| ||||| |||| ||||||||| |||| ||  |||||||||||||||| ||| ||| |||||||||||||||||||||||  || |||||||| |    
T  30520701 aagagttgttttcccaataccacctaagccaacaattggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctct 30520602  T
Q  174 ttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgccattcagc 238  Q
    ||||| |||||||| ||| | ||  |||||||| ||||||||||||| |||||||||||||||||    
T  30520601 ttatcatcttctcgaccatatacttttggttcagcaataatagagctagtttgacgccattcagc 30520537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 30561041 - 30560877
Alignment:
Q  74 aagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttcttt 173  Q
    |||||| ||||| |||| ||||||||| |||| ||  |||||||||||||||| ||| ||| |||||||||||||||||||||||  || |||||||| |    
T  30561041 aagagttgttttcccaataccacctaagccaacaattggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctct 30560942  T
Q  174 ttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgccattcagc 238  Q
    ||||| |||||||| ||| | ||  |||||||| ||||||||||||| |||||||||||||||||    
T  30560941 ttatcatcttctcgaccatatacttttggttcagcaataatagagctagtttgacgccattcagc 30560877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 17417726 - 17417507
Alignment:
Q  17 ccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatag 116  Q
    ||||| ||| ||||||||||||||||||||  ||||||||||||||||| |||||   ||||| ||||| |||| ||||||||||||||  | |||||||    
T  17417726 ccaaatttttgtattaaaattgctactcaccctaacatcattgtagaccaattgagctagagttgttttaccaataccacctaacccaactatgggatag 17417627  T
Q  117 atggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatag 216  Q
    |  |||||||  ||  | ||| ||||||||||||| ||||||   | |||||||||| |||| ||||| |||||||||||  |||||||| ||||||  |    
T  17417626 actgaaaggatttcacaatcccttgcttgggtgagcagaaactcaacaatcttctttgtatcatcttcccgtccaaacacctttggttcagcaataaagg 17417527  T
Q  217 agctggtttgacgccattca 236  Q
    |||||||||| |||||||||    
T  17417526 agctggtttggcgccattca 17417507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 30476348 - 30476594
Alignment:
Q  17 ccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatag 116  Q
    ||||||||| ||||||||||||||||| ||  ||  |||||||||||||  ||||  ||| || ||||| |||| ||||||||  |||| ||  ||||||    
T  30476348 ccaaacttttgtattaaaattgctacttaccctatgatcattgtagaccatttgagcaagtgttgttttaccaacaccacctaggccaacaataggatag 30476447  T
Q  117 atggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatag 216  Q
    ||||| |||||||| ||  | |  ||||||||||||||||||  || |||| ||| | |||| ||| |||||||||||||  | |||||| ||||||| |    
T  30476448 atggataggaagtcagatacttgcgcttgggtgagaagaaactcgacaatcctctctctatcatctactcgtccaaacactttgggttcagcaataatgg 30476547  T
Q  217 agctggtttgacgccattcagctacttcatttgggctttcccgaaca 263  Q
    |||| ||||| ||||||||||| ||||||||||| ||||||| ||||    
T  30476548 agcttgtttggcgccattcagcaacttcatttggcctttccctaaca 30476594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 30712563 - 30712257
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||| |||  ||| |||||||| ||||||  ||||||||||||||| | |||||| |||||| |||||||||| ||||||||| |||| || |||||    
T  30712563 acccaaaattttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaaaccaacaatgggat 30712464  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    |||  |||| |||||| |||||||| || |||||||||||||||  || |||||| | |||||| |  |||| ||| | | |  ||| ||||| |    |    
T  30712463 agacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcattgtctcttcccagcgcttttgattcaagaggggt 30712364  T
Q  215 agagctggtttgacgccattcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatca 314  Q
     ||||||||||| |||| ||||||||||| || |||| |||||| || ||||||   |||   ||||||| ||||||| ||||| || ||||||||||||    
T  30712363 ggagctggtttggcgcccttcagctacttgatctgggatttccctaagagttcc---acccatctgtagagaaaacttgttcttactttcagcaatatca 30712267  T
Q  315 tccaacctcc 324  Q
    || |||||||    
T  30712266 tctaacctcc 30712257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 30436784 - 30437027
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||| |||  ||| |||||||| ||||||  ||||||||||||||| | |||||| |||||| |||||||||| ||||||||| |||| ||||||||    
T  30436784 acccaaatttttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaaaccaacaacgggat 30436883  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    |||  ||||  ||||| |||||||| ||  |||| |||||||||  || |||||| | |||||| || |||| ||| |||||  ||| ||||| |    |    
T  30436884 agacagaaataaagtcagagtccttcgcaagggtaagaagaaactggacaatcttttctttatcatcgtctcttcctaacacttttgtttcaagaggggt 30436983  T
Q  215 agagctggtttgacgccattcagctacttcatttgggctttccc 258  Q
     ||||||||||| |||| ||||||  ||| || |||||||||||    
T  30436984 ggagctggtttggcgcccttcagcagcttgatctgggctttccc 30437027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 30484372 - 30484678
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||| |||  ||| |||||||| ||||||  ||||||||||||||| | |||||| |||||| |||||||||| ||||||||| |||| || |||||    
T  30484372 acccaaatttttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaaaccaacaatgggat 30484471  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    |||  |||| |||||  |||||||| || | |||||||||||||  || |||||| | |||||| || |||| ||| ||  |  ||| ||||| |    |    
T  30484472 agacagaaatgaagttagagtccttcgcataggtgagaagaaactcgacaatcttttctttatcatcgtctcttcctaatgcttttgattcaagaggggt 30484571  T
Q  215 agagctggtttgacgccattcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatca 314  Q
     ||||||||||| |||| ||||||||||| || |||| || ||| || |||| |   |||   ||||||| ||||||| ||||| || ||||||||||||    
T  30484572 ggagctggtttggcgcccttcagctacttgatctgggattaccctaagagtttc---acccgtctgtagagaaaacttgttctttctttcagcaatatca 30484668  T
Q  315 tccaacctcc 324  Q
    || |||||||    
T  30484669 tctaacctcc 30484678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 17983895 - 17984012
Alignment:
Q  41 actcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtccttt 140  Q
    ||||||| || |||| ||||||||| |||||  |||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| |||  | |     
T  17983895 actcacgttatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaacccaacaatgggatagacggaaaggaagtcagagaacctc 17983994  T
Q  141 gcttgggtgagaagaaac 158  Q
    ||||||||||||||||||    
T  17983995 gcttgggtgagaagaaac 17984012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 30330331 - 30330190
Alignment:
Q  28 tattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaa 127  Q
    |||||||||| | ||||||  ||| ||||| || || | || ||| || ||| |||||||||| ||| ||||| ||||  | ||||||||||||||||||    
T  30330331 tattaaaatttccactcaccctaatatcatcgtggatcaatcgaacaatagttgtttttccaatacctcctaaaccaactatgggatagatggaaaggaa 30330232  T
Q  128 gtcggagtcctttgcttgggtgagaagaaacctgataatctt 169  Q
    ||| | |||| | |||||||||||||||||| ||| ||||||    
T  30330231 gtcagtgtccctcgcttgggtgagaagaaacttgacaatctt 30330190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 30329789 - 30329730
Alignment:
Q  199 ttggttcaacaataatagagctggtttgacgccattcagctacttcatttgggctttccc 258  Q
    |||||||| |||||| | |||||||||| || |||||||||||||||| ||| |||||||    
T  30329789 ttggttcagcaataacaaagctggtttggcgtcattcagctacttcatgtggcctttccc 30329730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 17984020 - 17984090
Alignment:
Q  180 tcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgccattcagctacttcatttgg 250  Q
    |||||||||||||||||  ||| |||| ||||||  | ||||||||| ||||||||||| |||||| ||||    
T  17984020 tcttctcgtccaaacacttttgattcagcaataacggggctggtttggcgccattcagccacttcacttgg 17984090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 25293082 - 25292828
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||| ||| ||||||||| ||||||||||  ||||||||||||||||| |||||| |||||| |||||||||| ||||||||| |||| || |||||    
T  25293082 acccaaatttttgtattaaaagtgctactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaacaatgggat 25292983  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
     || |||||||||||| |||||| |||||||||| |||||||||  || | |||||| |||||| |||||||||||||| ||  |||||||  |||||||    
T  25292982 ggacggaaaggaagtcagagtcccttgcttgggtaagaagaaactcgacagtcttctctttatcatcttctcgtccaaatacttttggttcggcaataat 25292883  T
Q  215 agagctggtttgacgccattcagctacttcatttgggctttcccgaacagttcca 269  Q
    ||| || ||||| ||| |||||||||||||| ||| |||||||| ||||||||||    
T  25292882 agaactagtttggcgctattcagctacttcagttgagctttccctaacagttcca 25292828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 7100392 - 7100627
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||| ||| || || ||||||  ||||||  || |||||||||| ||| |||||  |||||| |||||||||| ||||||||| || | || |||||    
T  7100392 acccaaatttttgttttgaaattgtcactcaccctatcatcattgtaaaccaattgagaaagagttgtttttccaacaccacctaaaccgacaatgggat 7100491  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    ||| ||| |||||||| |||||||||||||||||||||||||||   | |||||||| |||||| ||||||||||||||||   |||||||| ||||||     
T  7100492 agacggataggaagtcagagtcctttgcttgggtgagaagaaactcaacaatcttctctttatcatcttctcgtccaaacatctttggttcagcaataaa 7100591  T
Q  215 agagctggtttgacgccattcagctacttcatttgg 250  Q
     ||||||||||| ||||||||||| |||||| ||||    
T  7100592 ggagctggtttggcgccattcagccacttcagttgg 7100627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 7580854 - 7580619
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||| ||| || || ||||||  ||||||  || |||| ||||||||| |||||  |||||| |||||||||| ||||||||| |||| ||  ||||    
T  7580854 acccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggat 7580755  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    ||| |||||||||||| |||||| | ||||||||||||||||||   | |||| ||| |||||| |||||||||||||||||  |||||||  |||||||    
T  7580754 agacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacacctttggttcggcaataat 7580655  T
Q  215 agagctggtttgacgccattcagctacttcatttgg 250  Q
     ||||||||||| ||||| ||||| |||||| ||||    
T  7580654 ggagctggtttggcgccagtcagccacttcaattgg 7580619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 324
Target Start/End: Complemental strand, 20295700 - 20295411
Alignment:
Q  32 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcg 131  Q
    |||||||| |||||||  | |||||||||||||  |||||| |||||| |||||||||| ||||||||| |||| || ||||||||  |||| ||||||     
T  20295700 aaaattgccactcacgcgatcatcattgtagactaattgaacaagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagtca 20295601  T
Q  132 gagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgcc 231  Q
    |||||||| || |||||||||||||||  || |||||| |||||||| || |||| ||| ||  |  ||| ||||| |    | ||||||||||| ||||    
T  20295600 gagtccttcgcatgggtgagaagaaactcgacaatcttttttttatcatcgtctcttcccaatgcttttgattcaagaggggtggagctggtttggcgcc 20295501  T
Q  232 attcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctcc 324  Q
     ||||||||||| || |||| |||||| || ||||||   |||   ||||||| ||||||| ||||| || |||||||||||||| |||||||    
T  20295500 cttcagctacttgatctgggatttccctaagagttcc---acccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcc 20295411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 309
Target Start/End: Original strand, 52352955 - 52353223
Alignment:
Q  40 tactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctt 139  Q
    |||||||  ||||||||||||||||| |||||| |||||| ||||| |||| ||||||||| |||| ||  ||||| |    |||||||||  | |   |    
T  52352955 tactcactctaacatcattgtagaccaattgaacaagagttgttttaccaacaccacctaaaccaacaataggatacacaacaaggaagtcaaacttact 52353054  T
Q  140 tgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataatagagctggtttgacgccattcagct 239  Q
     ||||||||||||||||||  |  |||||||| |||||| ||||  |||||||| |   | ||||||  || ||| ||||||||||| ||||||||||||    
T  52353055 cgcttgggtgagaagaaactcggcaatcttctctttatcttctttccgtccaaagattttcggttcagtaaaaatggagctggtttggcgccattcagct 52353154  T
Q  240 acttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaa 309  Q
    | |||| ||| ||||| || ||||||||||||||| ||  |||||| |||||| |||||||| |||||||    
T  52353155 atttcagttgagcttt-cctaacagttccagtaccctctcgtagaagaaacttgttcttcctttcagcaa 52353223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 13617637 - 13617805
Alignment:
Q  82 tttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtc 181  Q
    ||||| ||| ||||||||| |||| || |||||||   ||||| ||||| ||| || |  ||||||||||| ||||||| | |||||||| |||||  ||    
T  13617637 tttttgcaacaccacctaaaccaacaatgggatagtcagaaagaaagtcagaggccctcacttgggtgagatgaaacctaacaatcttctctttattatc 13617736  T
Q  182 ttctcgtccaaacacggttggttcaacaataatagagctggtttgacgccattcagctacttcatttgg 250  Q
    || ||||||||||||  ||| |||| ||||| | ||| | ||||| | ||||||| | |||||| ||||    
T  13617737 ttatcgtccaaacacctttgattcagcaatagtggagatcgtttggcaccattcaaccacttcaattgg 13617805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 26708303 - 26708609
Alignment:
Q  15 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggat 114  Q
    ||||||| |||  ||| |||||||  ||||||  ||||||| ||||||| | | |||| |||||| |||||||||| ||||||||| |||| || |||||    
T  26708303 acccaaatttttttatcaaaattgtcactcaccctaacatcgttgtagatcaactgaacaagagttgtttttccaataccacctaagccaacaatgggat 26708402  T
Q  115 agatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacggttggttcaacaataat 214  Q
    |||  |||| |||||| |||||||| || |||||||||||||||  || |||||| | |||||| || |||| ||| ||| |  ||| ||||| |    |    
T  26708403 agacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcatcgtctcttcccaacgcttttgtttcaagaggggt 26708502  T
Q  215 agagctggtttgacgccattcagctacttcatttgggctttcccgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatca 314  Q
     ||||||||||| |||| ||||||||||| || ||||||||||| || ||||||   |||   ||||||| ||||||| ||||| |  |||||||||  |    
T  26708503 ggagctggtttggcgcccttcagctacttgatatgggctttccctaagagttcc---acccgtctgtagagaaaacttgttcttacgttcagcaatacga 26708599  T
Q  315 tccaacctcc 324  Q
    ||||||||||    
T  26708600 tccaacctcc 26708609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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