View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_20 (Length: 340)
Name: NF13259_low_20
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 323
Target Start/End: Complemental strand, 4721141 - 4720824
Alignment:
| Q |
6 |
actgaaatgaaatcataaaatcgctgcctctatctctaggaacattgtttttattaaaaaggatatgattgccaaatcttcatctttgctgttcaacctg |
105 |
Q |
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| T |
4721141 |
actgaaatgaaatcataaaatcgctgcctctatctctaggaacattgtttttattaaaaaggatatgattgccaaatcttcatctttgctgttcaacctg |
4721042 |
T |
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| Q |
106 |
caattgacgtatacatcaagagcaagcatgcgcagtttggtttagtgcacttactaattaactatagaaactatacacatggaagaatataagattgatc |
205 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4721041 |
caattgacgtatacatcaagagcaagcatgcgcaggtgggtttagtgcacttactaattaactatagaaactatacacatggaagaatataggattgatc |
4720942 |
T |
|
| Q |
206 |
aaaacttctccaataatggaccctacgaatcaaaaactaggtaacctcaaatctaatatttgtggtccatatattagcaaattaagtttgccatacactt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4720941 |
aaaacttctccaataatggaccctacgaatcaaaaactaggtaacctcaaatataatatttgtggtccatatattagcaaattaagtttgccatacactt |
4720842 |
T |
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| Q |
306 |
ttaacaatagtgataatt |
323 |
Q |
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|||||||||||||||||| |
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| T |
4720841 |
ttaacaatagtgataatt |
4720824 |
T |
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