View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_23 (Length: 318)
Name: NF13259_low_23
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 14503386 - 14503116
Alignment:
| Q |
24 |
aagaggcatgagtttctggtttcattgagattaagtaatttatttatttatttatgctggccaattagctgtaatgacagtgactcacaggggaccagat |
123 |
Q |
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| T |
14503386 |
aagagacatgagtttctggtttcattgagattaagtaatttatttatttat----gctggccaattagctgtaatgacagtgactcacaggggaccagat |
14503291 |
T |
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| Q |
124 |
tctgtatatgttttccatttttgttgctcttagaagttagaaaattccaatcagtcaattactataaaatttgaaaattcatagctagaaataaagggac |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14503290 |
tctgtatatgttttccatttttgttgctcttagaagttagaaaattccaattagtcaattactataaaatttgaaaattcatagctagaaataaagggac |
14503191 |
T |
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| Q |
224 |
tgctggcaaaatggtaggcatcattgcttgaacccaaaaaggagaaacactgtgaaacaaaggcaacttaattta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14503190 |
tgctggcaaaatggtaggcatcattgcttgaacccaaaaaggagaaacactgtgaaacaaaggcaacttaattta |
14503116 |
T |
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