View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_24 (Length: 307)
Name: NF13259_low_24
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 49083194 - 49083480
Alignment:
| Q |
1 |
ttgaggaaaatttccnnnnnnnaacatagaaactggcaactcttttgtgcaaagtatcttcactcctacatcaccattttctgaagctgatagtaaatac |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49083194 |
ttgaggaaaatttcctttttttaacatagaaactggcaactctt--gtgcaaagtatcttcacttctacatcaccattttctgaagctgatagtaaatac |
49083291 |
T |
|
| Q |
101 |
atggaaaatatgcaggataattctatcaaatatgaaagggagtcggctgagtataaggacgaaactggaggtatataactttcttttatcttgtattttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49083292 |
atggaaaatatgcaggataattctatcaaatatgaaagggagtcggctgagtataaggacgtaactggaggtatataactttcttttatcttgtattttt |
49083391 |
T |
|
| Q |
201 |
gttcaannnnnnngcccttattttgttagttattgacaattaatgtttgttgcagagaaatcaactacaatagcatctaaagctgcagg |
289 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49083392 |
gttcaatttttttgcccttattttgttagttattgacaattaacgtttattgcagagaaatcaactacaatagcatctaaagctgcagg |
49083480 |
T |
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