View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_26 (Length: 277)
Name: NF13259_low_26
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 4259304 - 4259046
Alignment:
| Q |
1 |
atgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggag |
100 |
Q |
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| T |
4259304 |
atgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggag |
4259205 |
T |
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| Q |
101 |
ttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgcct |
200 |
Q |
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| T |
4259204 |
ttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgcct |
4259105 |
T |
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| Q |
201 |
tgataattataaagtattatactacatacaaatatgctatataattagacgaaaatgat |
259 |
Q |
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| T |
4259104 |
tgataattataaagtattatactacatacaaatatgctatataattagacgaaaatgat |
4259046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 4262926 - 4262668
Alignment:
| Q |
1 |
atgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262926 |
atgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggag |
4262827 |
T |
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| Q |
101 |
ttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgcct |
200 |
Q |
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| T |
4262826 |
ttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgcct |
4262727 |
T |
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| Q |
201 |
tgataattataaagtattatactacatacaaatatgctatataattagacgaaaatgat |
259 |
Q |
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| T |
4262726 |
tgataattataaagtattatactacatacaaatatgctatataattagacgaaaatgat |
4262668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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