View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_27 (Length: 260)
Name: NF13259_low_27
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 45566161 - 45566400
Alignment:
| Q |
14 |
aactacaattccatctaattcctcctccagcaaccacgagttct----------gggaaatgatctgaacggtgtgaaatgacatcatgaagttgtcatt |
103 |
Q |
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| T |
45566161 |
aactacaattccatctaattcctcctccagcaaccacgagttctcaaaagtatagggaaatgatctgaacggtgtgaaatgacatcatgaagttgtcatt |
45566260 |
T |
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| Q |
104 |
gtggaaaaatatcatattaagtttttgtgaccactgcttggtccggtctctcctcctagaaattttgcctaccaagacctttaacccaagtaaacggata |
203 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45566261 |
gtggaaaaatatcatattaagtttgtgtgaccactgctcggtccggtctctcctcctagaaattttgcctaccaagacctttaacccaagtaaacggata |
45566360 |
T |
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| Q |
204 |
atcagcaagggaaatgtcatttaaattactgtcttgaaac |
243 |
Q |
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| T |
45566361 |
atcagcaagggaaatgtcatttaaattactgtcttgaaac |
45566400 |
T |
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