View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_28 (Length: 252)
Name: NF13259_low_28
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 9019872 - 9020115
Alignment:
| Q |
1 |
ctaataaaaagtttcttacattgacaacgaaagcta--tacacatatttgcagaatattaatcaattacaacctaatccaactccattgacaacttactc |
98 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9019872 |
ctaataaaaagtttcttacattgacaacgaaagctaaatacacatatttgcagaatattaatcaattacaacctaatccaactccattgacaacttactc |
9019971 |
T |
|
| Q |
99 |
gtatgttttcgataaataagnnnnnnnnnnnnnnnnnnacattgaaaaattaagaatggagacgagcaaaatatgtgtctaaaacgagcaaaatttgtct |
198 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9019972 |
gtatgttttcgataaataagttttctttttaattttttacattgaaaaattaagaatggagacgagcaaaatatgtgtctaaaacgagcaaaatttgtct |
9020071 |
T |
|
| Q |
199 |
ctaaacatatctgggacaaaatcacataccgaattgggtctgtg |
242 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9020072 |
ctaaacatatctgggacaaaatcacataccgaactgggtctgtg |
9020115 |
T |
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