View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_3 (Length: 787)
Name: NF13259_low_3
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 1 - 781
Target Start/End: Original strand, 54636089 - 54636873
Alignment:
| Q |
1 |
ttcagccatttcgagtacttaacgaaatatgctgcacattttctcatagtttaaacttcaaatagttcataggccattcatttgcagctcaaacttgttt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636089 |
ttcagccatttcgagtacttaatgaaatatgctgcacattttctcatagtttaaacttcaaatagttcataggccattcatttgcagctcaaacttgttt |
54636188 |
T |
|
| Q |
101 |
tcttgcttattaagtagagccagattaactaattacattttggtagcttgcgccttggattataaatgttgggcatatatgcatgcacctatactcatga |
200 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636189 |
tcctgcttattaagtagagccagaataactaattacattttggtagcttgtgccttggattataaatgttgggcatatatgcatgcacctatactcatga |
54636288 |
T |
|
| Q |
201 |
agagcatgtaaaaaccgaaacgtcattaagattacttagacttgattgaagcatattaggcatcaatataccagaaatgagaaatgaaaaacagtgggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54636289 |
agagcatgtaaaaaccgaaacgtcattaagattacttagacttgatcgaagcatattcggcatcaatataccagaaatgagaaatgaaaaagagtgggaa |
54636388 |
T |
|
| Q |
301 |
aaaacttaaatgaagaaggcaagataagttcatataatctatgttcataggcttttaatgtaatttttgtttgtgctgttttgccttattggctggattt |
400 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636389 |
aatatttaaatgaagaaggcaagataagttcatataatctatgttcataggcttttaatgtaatttttgtttgtgctgttttgccttattggctggattt |
54636488 |
T |
|
| Q |
401 |
gatgtattaactttgttggctgggcgcaggccctctcctgccgtttattgca-ttgttgcttgat---nnnnnnnnnnngcatttagcagatttgacaaa |
496 |
Q |
| |
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| T |
54636489 |
gatgtattaactttgttggctgggcgcaggccctctcctgccgtttattgcatttgttgcttgatagaaagaaaaaaaagcatttagcagatttgacaaa |
54636588 |
T |
|
| Q |
497 |
cataccatatgctcgagttcaggacgattccattccagttaaaattcaataaatatcnnnnnnnacaagattttaataaaaccactgtttgtcaagttac |
596 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54636589 |
cataccatatgctcgagttcaggacgagtccattccagttaaaattcaataaatatctttttttacaagattttaataaaaccactgtttgtcaagttac |
54636688 |
T |
|
| Q |
597 |
ttgttcctgtgagtgagatgcatctggaactgatctgaattgtgtaattatcatggaattccttgctactgtattgcagggagagtgcgaactaattaaa |
696 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636689 |
ttgttcctgtgagtgagatgcatctggaactgatctgaattgtgtaattatcatggaattccttgctactgtattgcagggagagtgcgaactaattaaa |
54636788 |
T |
|
| Q |
697 |
attgatatcaattgccatattcaaggtgatgttgtgatcgagggtattaacttgaatgatgatatggagcatgaaatgatgatgt |
781 |
Q |
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| T |
54636789 |
attgatatcaattgccatattcaaggtgatgttgtgatcgagggtattaacttgaatgatgatatggagcatgaaatgatgatgt |
54636873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 1963694 - 1963746
Alignment:
| Q |
413 |
ttgttggctgggcgcaggccctctcctgccgtttattgca-ttgttgcttgat |
464 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1963694 |
ttgttggctgggcgcaggccctctcctgccgtttattgcatttgttgcttgat |
1963746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 25460126 - 25460093
Alignment:
| Q |
413 |
ttgttggctgggcgcaggccctctcctgccgttt |
446 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
25460126 |
ttgttggctgggcgcaggccctctcctgccgttt |
25460093 |
T |
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