View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_32 (Length: 233)
Name: NF13259_low_32
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 131328 - 131532
Alignment:
| Q |
13 |
aacaatatatgagagaaaatgaaagagacttgaaaataatgttgttgatgaacatttcaccgcgaccagaatagaaatatttgaagaaggaccaaagatt |
112 |
Q |
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| T |
131328 |
aacaaaatatgagagaaaatgaaagagacttgaaaataatgttgttgatgaacatttcaccgcgaccagaatagaaatatttgaagaaggaccaaagatt |
131427 |
T |
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| Q |
113 |
tccaattaaaggccatcccatgtcaccaggaggtagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactttg |
212 |
Q |
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| T |
131428 |
tccaattaaaggccatcccatgtcaccaggaggtagtggatattgtttgtttttaaatataagatcataataccatccattcaaattcctcataactttg |
131527 |
T |
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| Q |
213 |
ctaac |
217 |
Q |
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||||| |
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| T |
131528 |
ctaac |
131532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 150634 - 150828
Alignment:
| Q |
23 |
gagagaaaatgaaagagacttgaaaataatgttgttgatgaacatttcaccgcgaccagaatagaaatatttgaagaaggaccaaagatttccaattaaa |
122 |
Q |
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| T |
150634 |
gagagaaaatgaaagagacttgtgaacaatgttgttgatgaacgtttcaccgcgaccagacgagaaatatttgaagaaggtccataggtttccaataaaa |
150733 |
T |
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| Q |
123 |
ggccatcccatgtcaccaggaggtagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactttgctaac |
217 |
Q |
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| T |
150734 |
ggccatcccatatcaccgggaggcagtggatattgtttgtttttaaatttaagatcataataccatccattcaagttcctcataactttgctaac |
150828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 10303314 - 10303125
Alignment:
| Q |
28 |
aaaatgaaagagacttgaaaataatgttgttgatgaacatttcaccgcgaccagaatagaaatatttgaagaaggaccaaagatttccaattaaaggcca |
127 |
Q |
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||||||||| | |||||| || |||||||| ||||||||||||| | || ||||| | |||||||||||||||| |||||||||||||| ||| ||||| |
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| T |
10303314 |
aaaatgaaaaatacttgagaacaatgttgtcgatgaacatttcagcacgcccagataaaaaatatttgaagaagggccaaagatttccaactaatggcca |
10303215 |
T |
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| Q |
128 |
tcccatgtcaccaggaggtagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactttgctaac |
217 |
Q |
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| T |
10303214 |
tcccatgtcaccaggaggcagtgggttttgttggtttttaaatttaagatcataataccattcattcaaattccacataactttgttaac |
10303125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 892222 - 892161
Alignment:
| Q |
23 |
gagagaaaatgaaagagacttga----aaataatgttgttgatgaacatttcaccgcgacca |
80 |
Q |
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| T |
892222 |
gagagaaagtgaaagagacttgagaacaatgaatgttgttgatgaacgtttcaccgcgacca |
892161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 3961756 - 3961926
Alignment:
| Q |
48 |
ataatgttgttgatgaacatttcaccgcgaccagaatagaaatatttgaagaaggaccaaagatttccaattaaaggccatcccatgtcaccaggaggta |
147 |
Q |
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||||||||||||||||| || |||| ||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
3961756 |
ataatgttgttgatgaatatatcacggcgaccagatgagaaatatttgaagaagggccaaagattaccaattaaaggccatcccatatcaccaggaggta |
3961855 |
T |
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| Q |
148 |
gtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactttgctaact |
218 |
Q |
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| T |
3961856 |
gtggaaattgtttgtttctaaatttaatatcataataccactcattcaaattccgaacaactttgctaact |
3961926 |
T |
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