View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13259_low_4 (Length: 726)

Name: NF13259_low_4
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13259_low_4
NF13259_low_4
[»] chr2 (1 HSPs)
chr2 (21-661)||(45102099-45102736)


Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 21 - 661
Target Start/End: Original strand, 45102099 - 45102736
Alignment:
Q  21 gtcagacctacgattctacttggatgtaaaatctcaaataattgcctcattttaaatgtgataattgcctcattattattcctcaagtttatggtctcaa 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45102099 gtcagacctacgattatacttggatgtaaaatctcaaataattgcctcattttaaatgtgataattgccttattattattcctcaagtttatggtctcaa 45102198  T
Q  121 tgcattttaaatgcctcatttttactaaatagtataaatctcaaataatttgtattataa------aaacacgtatagaaaagtatgtgaaatatcatat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||    
T  45102199 tgcattttaaatgcctcatttttactaaatagtataaatctcaaataatttgtattataagtaccaaaacacgtatagaaaagtatgtgaaatatcatat 45102298  T
Q  215 caacttttatacattttttcactctattaccagttctggaaatgaagcattgtgtaaacgtgacaatgttgaatgtcctttccaaattgaaaagcttcgt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45102299 caacttttatacattttttcactctattaccagttctggaaatgaagcattgtgtaaacgtgaccatgttgaatgtcctttccaaattgaaaagcttcgt 45102398  T
Q  315 tcacatgtttttggtcaggagactttactcgtggcctctgagctgctggtaagatatgcgtccttttctgtttagggaccaaatcaatcgtctttttctc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45102399 tcacatgtttttggtcaggagactttactcgtggcctctgagctgctggtaagatatgcgtccttttctgtttagggaccaaatcaatcgtctttttctc 45102498  T
Q  415 ttcagctttcacacttactcattcttccctatttggttctctaaattctttgtttcattcacataataatca-ttttattacaatcaactgtagtcagtt 513  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45102499 ttcagctttcacactttctcattcttccctttttggttctctaaattctttgtttcattcacataataatcatttttattacaatcaactgtagtcagtt 45102598  T
Q  514 agcatttattactgtatattccaatcatactagatcgtatgaaaggaacgatataaataatgttagaattatttgtactaataatgtgagaattattact 613  Q
    |||||||||||||||||||||||||||||||||||||  |||        ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45102599 agcatttattactgtatattccaatcatactagatcg--tga--------atataaataattttagaattatttgtactaataatgtgagaattattact 45102688  T
Q  614 agtaactctaacatgagcgttactagtaataaattaaattagaataat 661  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  45102689 agtaactctaacatgagcgttactagtaataaattaaattcgaataat 45102736  T

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