View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13259_low_7 (Length: 602)
Name: NF13259_low_7
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 85 - 589
Target Start/End: Original strand, 3809590 - 3810099
Alignment:
| Q |
85 |
tatgggattatcatgtagaagaagatcatgtctatatgctgctattgaagctcaagatagaatacggctcccatcacaaaagggttcagattatatggta |
184 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3809590 |
tatgcgattatcatgtagaagaagatcatgtctatatgctgctattgaagctcaagatagaatacggctcccatcacaaaagggttcagattacatggta |
3809689 |
T |
|
| Q |
185 |
tgtcttcaagctaagtttaagtttacatatgnnnnnnn-----ataattgatgtgtttacatattttattatagaggcttaagtgtgtttgtttgttgtg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3809690 |
tgtcttcaagctaagtttaagtttacatatatatattttttttataattgatgtgtttacatattttattatagaggcttacgtgtgtttgtttgttgtg |
3809789 |
T |
|
| Q |
280 |
tagggattcacttatcgtgaactatttaatgacatcatccacaaagaatgcaaaaaactaagcaattaagtttggaggaaattggaagcactgtaacagc |
379 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3809790 |
tagggattcacttatcctgaactatttaatgatatcatccacaaagaatgcaaaaaactgagcaattaagtttggaggaaattggaagcagtgtaacagc |
3809889 |
T |
|
| Q |
380 |
ttgtttagtgtcataatctgcactctaacatctttaatatattgttccatttctaaattgcggtaacactattgctagaaatgaattatgggtaacaaca |
479 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3809890 |
ttatttagtgtcataatctgcactctaacatctttaatatatcgttctatttctaaattgcggtaacactattgctagaaatgaattatgggtaacaaca |
3809989 |
T |
|
| Q |
480 |
cgtacatgagaagaagaaaattgttcatttcattgatcaattgaaaccattaagccaaatatagaataatttatcaattggtagtccaacaacaacttat |
579 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3809990 |
cgtaaatgagaagaagaaaatagttcatttcattaatcaattgaatccattaagccaaatatagaataatttatcaattggtagtccaacaacagcttat |
3810089 |
T |
|
| Q |
580 |
tcagtataat |
589 |
Q |
| |
|
|||||||||| |
|
|
| T |
3810090 |
tcagtataat |
3810099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3808944 - 3809034
Alignment:
| Q |
1 |
acttttctttctttctctgtgttgattctcatctgtacacctatattaatgtgtttcttcttaatatttatgtcacgggtgcactatggga |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
3808944 |
acttttctttctttctctgtgttgattctcatctgtacacctatattgatgtgtttcttcttaatatttatgtcacagatgcactacggga |
3809034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 392 - 543
Target Start/End: Original strand, 3810095 - 3810244
Alignment:
| Q |
392 |
ataatctgcactctaacatctttaatatattgttccatttctaaattgcggtaacactattgctagaaatgaattatgggtaacaacacgtacatgagaa |
491 |
Q |
| |
|
||||| |||||| ||||| |||| | |||||||||||||||||| |||||||| ||||||| || |||| ||||||||||||||||||||| | | | |
|
|
| T |
3810095 |
ataatttgcactgtaacaacttttagatattgttccatttctaagttgcggtacaactattgttaaaaatcaattatgggtaacaacacgtaaa--aaga |
3810192 |
T |
|
| Q |
492 |
gaagaaaattgttcatttcattgatcaattgaaaccattaagccaaatatag |
543 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
3810193 |
gaagaaaatagtttatttcatttatcaattgacaccattaagccaaatatag |
3810244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University