View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13259_low_9 (Length: 494)

Name: NF13259_low_9
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13259_low_9
NF13259_low_9
[»] chr5 (8 HSPs)
chr5 (1-484)||(23774607-23775090)
chr5 (1-484)||(23861560-23862043)
chr5 (13-484)||(23764794-23765265)
chr5 (13-484)||(23814642-23815113)
chr5 (12-484)||(23754573-23755045)
chr5 (12-484)||(23820028-23820500)
chr5 (1-484)||(23690991-23691474)
chr5 (161-293)||(1428482-1428614)
[»] chr3 (7 HSPs)
chr3 (158-266)||(967858-967966)
chr3 (161-272)||(1937714-1937825)
chr3 (421-479)||(1941112-1941170)
chr3 (161-197)||(1931978-1932014)
chr3 (163-298)||(7443688-7443823)
chr3 (447-477)||(968161-968191)
chr3 (161-263)||(7432842-7432944)
[»] chr8 (2 HSPs)
chr8 (161-311)||(19727109-19727259)
chr8 (173-275)||(31145151-31145253)


Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 23775090 - 23774607
Alignment:
Q  1 ggtcacgttaaccctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttgttctccaatactgactgagaaaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23775090 ggtcacgttaaccctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttcttctccaatactgactgagaaaacaa 23774991  T
Q  101 tcaccaccaagccgcagcagttgataggaaacctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattct 200  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23774990 tcaccaccaagccacagcagttgataggaaccctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattct 23774891  T
Q  201 ccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctctaatttctgatccaaagttcgccaagaagcactttctc 300  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23774890 ccataggctccccgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaatttctgatcccaagttcgccaagaagcactttctc 23774791  T
Q  301 ttctcaaccacatgcctcatccacatcttaacctactcctcactctcaaaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacg 400  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23774790 ttctcaaccacatgcctcatccacatcttagcctactcctcactctcacacaagtacattatcaagtcttaccctctcgactctcttttcaccaaagacg 23774691  T
Q  401 tagcctgcaagaaaatcgcgcagcacgagattccttccaaccgtgctgtttacattgttggctcatgcaatggcatcatctgtg 484  Q
    |||||||||| ||||||||||||||||||||| ||||||||| | || |||||| |||||||||||||||||||||||||||||    
T  23774690 tagcctgcaacaaaatcgcgcagcacgagattgcttccaaccattctatttacaatgttggctcatgcaatggcatcatctgtg 23774607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 23862043 - 23861560
Alignment:
Q  1 ggtcacgttaaccctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttgttctccaatactgactgagaaaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23862043 ggtcacgttaaccctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttcttctccaatactgactgagaaaacaa 23861944  T
Q  101 tcaccaccaagccgcagcagttgataggaaacctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattct 200  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861943 tcaccaccaagccacagcagttgataggaaccctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattct 23861844  T
Q  201 ccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctctaatttctgatccaaagttcgccaagaagcactttctc 300  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23861843 ccataggctccccgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaatttctgatcccaagttcgccaagaagcactttctc 23861744  T
Q  301 ttctcaaccacatgcctcatccacatcttaacctactcctcactctcaaaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacg 400  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23861743 ttctcaaccacatgcctcatccacatcttagcctactcctcactctcacacaagtacattatcaagtcttaccctctcgactctcttttcaccaaagacg 23861644  T
Q  401 tagcctgcaagaaaatcgcgcagcacgagattccttccaaccgtgctgtttacattgttggctcatgcaatggcatcatctgtg 484  Q
    |||||||||| ||||||||||||||||||||| ||||||||| | || |||||| |||||||||||||||||||||||||||||    
T  23861643 tagcctgcaacaaaatcgcgcagcacgagattgcttccaaccattctatttacaatgttggctcatgcaatggcatcatctgtg 23861560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 484
Target Start/End: Complemental strand, 23765265 - 23764794
Alignment:
Q  13 cctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttgttctccaatactgactgagaaaacaatcaccaccaagc 112  Q
    |||||||||||| || ||  ||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23765265 cctcttagttccctatacgataacatggctagaaaggcagtcaaaagaaacgataccgtttcttctccaatactgactgagaaaacaatcaccaccaagc 23765166  T
Q  113 cgcagcagttgataggaaacctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattctccataggctccc 212  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23765165 cgcagcagttgataggaaccctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattctctataggctccc 23765066  T
Q  213 tgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctctaatttctgatccaaagttcgccaagaagcactttctcttctcaaccaca 312  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||    
T  23765065 tgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaatttctgatcccaaattcgccaagaagcactttcgcttctcaaccaca 23764966  T
Q  313 tgcctcatccacatcttaacctactcctcactctcaaaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacgtagcctgcaaga 412  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23764965 tgcctcatccacatcttaacctactcctcactctcacaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacgtagcctgcaaga 23764866  T
Q  413 aaatcgcgcagcacgagattccttccaaccgtgctgtttacattgttggctcatgcaatggcatcatctgtg 484  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23764865 aaatcgcgcagcacgagattccttccaaccatgctgtttacattgttggctcatgcaatggcatcatctgtg 23764794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 484
Target Start/End: Complemental strand, 23815113 - 23814642
Alignment:
Q  13 cctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttgttctccaatactgactgagaaaacaatcaccaccaagc 112  Q
    |||||||||||| || ||  ||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23815113 cctcttagttccctatacgataacatggctagaaaggcagtcaaaagaaacgataccgtttcttctccaatactgactgagaaaacaatcaccaccaagc 23815014  T
Q  113 cgcagcagttgataggaaacctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattctccataggctccc 212  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23815013 cgcagcagttgataggaaccctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattctctataggctccc 23814914  T
Q  213 tgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctctaatttctgatccaaagttcgccaagaagcactttctcttctcaaccaca 312  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||    
T  23814913 tgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaatttctgatcccaaattcgccaagaagcactttcgcttctcaaccaca 23814814  T
Q  313 tgcctcatccacatcttaacctactcctcactctcaaaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacgtagcctgcaaga 412  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23814813 tgcctcatccacatcttaacctactcctcactctcacaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacgtagcctgcaaga 23814714  T
Q  413 aaatcgcgcagcacgagattccttccaaccgtgctgtttacattgttggctcatgcaatggcatcatctgtg 484  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23814713 aaatcgcgcagcacgagattccttccaaccatgctgtttacattgttggctcatgcaatggcatcatctgtg 23814642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 12 - 484
Target Start/End: Complemental strand, 23755045 - 23754573
Alignment:
Q  12 ccctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttgttctccaatactgactgagaaaacaatcaccaccaag 111  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23755045 ccctcttagttccatacagaataacatggctaacaaggcagtcaaaagaaacgataccgtttcttctccaatactgactgagaaaacaatcaccaccaag 23754946  T
Q  112 ccgcagcagttgataggaaacctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattctccataggctcc 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23754945 ccgcagcagttgataggaaccctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattctccataggctcc 23754846  T
Q  212 ctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctctaatttctgatccaaagttcgccaagaagcactttctcttctcaaccac 311  Q
    | |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  23754845 ccgtgaaacctctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaatttctgatcccaagttcgccaagaagcactttcgcttctcaaccac 23754746  T
Q  312 atgcctcatccacatcttaacctactcctcactctcaaaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacgtagcctgcaag 411  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||     
T  23754745 atgcctcatccacatcttaacctactcctcactctcacacaagtacattatcaagtcttaccctctcaactctcttttcaccaaagacgtagcctacaac 23754646  T
Q  412 aaaatcgcgcagcacgagattccttccaaccgtgctgtttacattgttggctcatgcaatggcatcatctgtg 484  Q
    ||||||||||||||||||||| |||||| || |  |||||||| |||||||||||||||||||||||||||||    
T  23754645 aaaatcgcgcagcacgagattgcttccagccattgtgtttacaatgttggctcatgcaatggcatcatctgtg 23754573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 12 - 484
Target Start/End: Complemental strand, 23820500 - 23820028
Alignment:
Q  12 ccctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttgttctccaatactgactgagaaaacaatcaccaccaag 111  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23820500 ccctcttagttccatacagaataacatggctaacaaggcagtcaaaagaaacgataccgtttcttctccaatactgactgagaaaacaatcaccaccaag 23820401  T
Q  112 ccgcagcagttgataggaaacctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattctccataggctcc 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23820400 ccgcagcagttgataggaaccctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattctccataggctcc 23820301  T
Q  212 ctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctctaatttctgatccaaagttcgccaagaagcactttctcttctcaaccac 311  Q
    | |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  23820300 ccgtgaaacctctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaatttctgatcccaagttcgccaagaagcactttcgcttctcaaccac 23820201  T
Q  312 atgcctcatccacatcttaacctactcctcactctcaaaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacgtagcctgcaag 411  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||     
T  23820200 atgcctcatccacatcttaacctactcctcactctcacacaagtacattatcaagtcttaccctctcaactctcttttcaccaaagacgtagcctacaac 23820101  T
Q  412 aaaatcgcgcagcacgagattccttccaaccgtgctgtttacattgttggctcatgcaatggcatcatctgtg 484  Q
    ||||||||||||||||||||| |||||| || |  |||||||| |||||||||||||||||||||||||||||    
T  23820100 aaaatcgcgcagcacgagattgcttccagccattgtgtttacaatgttggctcatgcaatggcatcatctgtg 23820028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 23690991 - 23691474
Alignment:
Q  1 ggtcacgttaaccctcttagttccatacacagtaacatggcaaacaaggcagtcaaaagaaacgataccgtttgttctccaatactgactgagaaaacaa 100  Q
    |||||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||    
T  23690991 ggtcacattagccctcttagttcgataaacaataacatggctaacaaggcagtcaaaagaaacgataccgtttcttctccaatcccgactgagaagacaa 23691090  T
Q  101 tcaccaccaagccgcagcagttgataggaaacctaatttcatcgtcacttcactcatcgccacttcccactattcctttcgatctcattccagaaattct 200  Q
    || ||||||||| |||||| | ||| |||| ||||  |||||||||||||||  | ||||||||||| |||||||||| ||||||||||||| |||||||    
T  23691091 tccccaccaagcggcagcaatggattggaaccctatcttcatcgtcacttcatgcgtcgccacttccaactattccttgcgatctcattccataaattct 23691190  T
Q  201 ccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctctaatttctgatccaaagttcgccaagaagcactttctc 300  Q
    ||| ||||| || ||||||||||||||||||||||| || |||||||||  |||||||||||||||||||||||| || ||||||||||||||  |||      
T  23691191 ccacaggcttccggtgaaacccctcatgcaatttcgatgtgtgtgcaagctgtggaattctctaatttctgatcccaaattcgccaagaagcagcttcga 23691290  T
Q  301 ttctcaaccacatgcctcatccacatcttaacctactcctcactctcaaaaaagtacactatcaagtcttaccctctcgactctcttttcaccaaagacg 400  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| |||||||    
T  23691291 ttctcaaccgcatacctcatccacatcttaacctactcctcactcccaaacaagtacactatcaagtcttaccctttcgactctcttttcactaaagacg 23691390  T
Q  401 tagcctgcaagaaaatcgcgcagcacgagattccttccaaccgtgctgtttacattgttggctcatgcaatggcatcatctgtg 484  Q
    |||||||||| | ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  23691391 tagcctgcaacataatcgcgcagcacgagattacttccaaccatcctgtttacattgttggctcatgcaatggcatcatctgtg 23691474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 1428614 - 1428482
Alignment:
Q  161 cacttcccactattcctttcgatctcattccagaaattctccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattc 260  Q
    ||||||||||| ||||||||||  ||||| || |||| ||||||||||| || ||||||| |||| | ||| | || ||| | ||||||   || |||||    
T  1428614 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgtaattc 1428515  T
Q  261 tctaatttctgatccaaagttcgccaagaagca 293  Q
    ||||||  ||||||  || ||||||||||||||    
T  1428514 tctaatcactgatctcaaattcgccaagaagca 1428482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 967858 - 967966
Alignment:
Q  158 cgccacttcccactattcctttcgatctcattccagaaattctccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaa 257  Q
    |||||||||| ||| ||||||||||||||||||||||||||||   ||||||  | || || | |||||||||||| || || |||||||||| ||||||    
T  967858 cgccacttccgactcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaa 967957  T
Q  258 ttctctaat 266  Q
    |||||||||    
T  967958 ttctctaat 967966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 1937825 - 1937714
Alignment:
Q  161 cacttcccactattcctttcgatctcattccagaaattctccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattc 260  Q
    ||||||||||| ||||||| ||||||||||||||||| |||  ||||||  | ||||||| |||| ||  ||| || ||||| |||||||  | ||||||    
T  1937825 cacttcccactcttccttttgatctcattccagaaatcctctctaggctatcggtgaaactcctcctgagattccggtgcgtttgcaagtcatagaattc 1937726  T
Q  261 tctaatttctga 272  Q
    ||||||||||||    
T  1937725 tctaatttctga 1937714  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 479
Target Start/End: Complemental strand, 1941170 - 1941112
Alignment:
Q  421 cagcacgagattccttccaaccgtgctgtttacattgttggctcatgcaatggcatcat 479  Q
    ||||||||| |||||||| |||||  ||||||| |||||||||||| ||||||||||||    
T  1941170 cagcacgagtttccttccgaccgttatgtttactttgttggctcattcaatggcatcat 1941112  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 1932014 - 1931978
Alignment:
Q  161 cacttcccactattcctttcgatctcattccagaaat 197  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1932014 cacttcccactcttcctttcgatctcattccagaaat 1931978  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 7443823 - 7443688
Alignment:
Q  163 cttcccactattcctttcgatctcattccagaaattctccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctc 262  Q
    ||||||||| |||| ||||||||| | || || ||||||   ||||| |||||||||   ||||| ||| |||| ||| | || ||||  |  ||||||     
T  7443823 cttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctt 7443724  T
Q  263 taatttctgatccaaagttcgccaagaagcactttc 298  Q
    ||||||||||||| || |||||||||||||||||||    
T  7443723 taatttctgatcccaatttcgccaagaagcactttc 7443688  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 447 - 477
Target Start/End: Original strand, 968161 - 968191
Alignment:
Q  447 tgtttacattgttggctcatgcaatggcatc 477  Q
    |||||||||||||||||||||||||||||||    
T  968161 tgtttacattgttggctcatgcaatggcatc 968191  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 7432944 - 7432842
Alignment:
Q  161 cacttcccactattcctttcgatctcattccagaaattctccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattc 260  Q
    |||| |||||| ||||||||||||||||| ||||||| |||  |||||| || ||||| |  ||| | ||||| || ||| | ||||||| |||||||||    
T  7432944 cactccccactcttcctttcgatctcattacagaaatactctctaggcttccggtgaagcttctccttcaattgcgatgcatctgcaagtcgtggaattc 7432845  T
Q  261 tct 263  Q
    |||    
T  7432844 tct 7432842  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 311
Target Start/End: Original strand, 19727109 - 19727259
Alignment:
Q  161 cacttcccactattcctttcgatctcattccagaaattctccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattc 260  Q
    ||||||| ||| ||||||||||||||||||||||||||||   |||||| || ||||||  |||| |||| || || || || ||||||| || ||||||    
T  19727109 cacttcctactcttcctttcgatctcattccagaaattctaagtaggctacccgtgaaattcctcttgcagttccgatgtgtttgcaagtcgttgaattc 19727208  T
Q  261 tctaatttctgatccaaagttcgccaagaagcactttctcttctcaaccac 311  Q
    |||||| |||||||  || |||||||| || ||| ||| | ||||||||||    
T  19727209 tctaatctctgatcacaaattcgccaacaaacacattcgcgtctcaaccac 19727259  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 275
Target Start/End: Complemental strand, 31145253 - 31145151
Alignment:
Q  173 ttcctttcgatctcattccagaaattctccataggctccctgtgaaacccctcatgcaatttcgttgcgtgtgcaagtggtggaattctctaatttctga 272  Q
    ||||||||||||||||| |||| || |||  ||| ||||||||||||  |||||| ||||| |  || || |||||||  ||||||||||| || |||||    
T  31145253 ttcctttcgatctcattacagatatcctctgtagactccctgtgaaattcctcatacaattccagtgtgtttgcaagtcatggaattctcttatatctga 31145154  T
Q  273 tcc 275  Q
    |||    
T  31145153 tcc 31145151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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