View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1325R-Insertion-12 (Length: 244)
Name: NF1325R-Insertion-12
Description: NF1325R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1325R-Insertion-12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 41439700 - 41439935
Alignment:
| Q |
7 |
cagaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41439700 |
cagaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
41439799 |
T |
|
| Q |
107 |
tttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcacca |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41439800 |
tttcaacaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcacca |
41439899 |
T |
|
| Q |
207 |
caatcagcttcaagtttttctctaaaaattggaaaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41439900 |
caatcagcttcaagtttttctctaaaaattggaaaa |
41439935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 41452869 - 41453106
Alignment:
| Q |
7 |
cagaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41452869 |
cagaaaccaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
41452968 |
T |
|
| Q |
107 |
tttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcacca |
206 |
Q |
| |
|
|| || |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41452969 |
gtttaataatgcaagaaaagcagtaaaaagaatctctttccaccctgagattatcaatgacttaactaacttaagtgtggttactctattgactgcacca |
41453068 |
T |
|
| Q |
207 |
caatcagcttcaagtttttctctaaaaattggaaaagc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41453069 |
caatcagcttcaagtttttctctaaaaattggaaaagc |
41453106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 14241855 - 14242091
Alignment:
| Q |
8 |
agaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| || |||||| |
|
|
| T |
14241855 |
agaaaccaacacatagccttgattctcatataacctttttccgtcaatgtattgaacaaaagaatcaataagataaggaccaacataagtagaaaaagtg |
14241954 |
T |
|
| Q |
108 |
ttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcaccac |
207 |
Q |
| |
|
|| | |||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
14241955 |
tttaccaatgcaagaaaagcagtgataagaatttctttccaccctgagattatcaatgacttaaccaacttaagtgtggttactctattgattgcaccac |
14242054 |
T |
|
| Q |
208 |
aatcagcttcaagtttttctctaaaaattggaaaagc |
244 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
14242055 |
aatcagcttcaagtttgtctctgaaaataggaaaagc |
14242091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 14371466 - 14371230
Alignment:
| Q |
8 |
agaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||||| |
|
|
| T |
14371466 |
agaaaccaacacatagccttgattctcatatagcctttttccatcaaggtattgaacaaaagaatcaataagataagggccaacataagtagaaaaagtg |
14371367 |
T |
|
| Q |
108 |
ttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcaccac |
207 |
Q |
| |
|
|| | |||| |||| ||||||||| || ||||||||| |||||||||||| || |||||||| || |||||||||||||||||||||| |||||||| |
|
|
| T |
14371366 |
tttaccaatgcaagagaagcagtgataaaaatctcttttttccctgagattatcaaagacttaaccaatttaagtgtggttactctattgattgcaccac |
14371267 |
T |
|
| Q |
208 |
aatcagcttcaagtttttctctaaaaattggaaaagc |
244 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
14371266 |
aatcagcttcaagtttgtctctgaaaataggaaaagc |
14371230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 21111287 - 21111516
Alignment:
| Q |
7 |
cagaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
106 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||||||| |||||||| || |||||||||||||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
21111287 |
cagaaaccaacacatagctttgattctcatatagcctttt-ccatcaagataatgaacaaaagagtcaataagttaaggaccaccataagaagcaaaatt |
21111385 |
T |
|
| Q |
107 |
tttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcacca |
206 |
Q |
| |
|
|| || |||| ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
21111386 |
gtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtgtggt-----cattgactgcacca |
21111480 |
T |
|
| Q |
207 |
caatcagcttcaagtttttctctaaaaattggaaaa |
242 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| |
|
|
| T |
21111481 |
caatcagcttcaagtttttctgaaaaagttggaaaa |
21111516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University