View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1325R-Insertion-14 (Length: 178)
Name: NF1325R-Insertion-14
Description: NF1325R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1325R-Insertion-14 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 51458500 - 51458667
Alignment:
| Q |
9 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458500 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
51458599 |
T |
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| Q |
109 |
agcaggtagaaccggcttagacaattttccattatctagttatagggatgcccctcatgaccatttac |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |
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| T |
51458600 |
agcaggtagaaccggcttagacaattttccattatctagctctatggatgcccctcatgaccatttac |
51458667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 30204175 - 30204068
Alignment:
| Q |
9 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |||||| ||||| |||||||| |
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| T |
30204175 |
gctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattgctctcctttaa |
30204076 |
T |
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| Q |
109 |
agcaggta |
116 |
Q |
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|||||||| |
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| T |
30204075 |
agcaggta |
30204068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 51483068 - 51483175
Alignment:
| Q |
9 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
108 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||| ||||||||| |||||| ||||| |||||||| |
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| T |
51483068 |
gctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgctctcctttaa |
51483167 |
T |
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| Q |
109 |
agcaggta |
116 |
Q |
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|||||||| |
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| T |
51483168 |
agcaggta |
51483175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 51499905 - 51500012
Alignment:
| Q |
9 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
108 |
Q |
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|||||||||||||||||||||||||||||||| || || ||| |||||||| || |||||||||||||||||||||| |||||| | | | |||||||| |
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| T |
51499905 |
gctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcctctcctttaa |
51500004 |
T |
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| Q |
109 |
agcaggta |
116 |
Q |
| |
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|||||||| |
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| T |
51500005 |
agcaggta |
51500012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 7e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 43162770 - 43162939
Alignment:
| Q |
9 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43162770 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatataaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaa |
43162869 |
T |
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| Q |
109 |
agcaggtagaaccggcttagacaattttccattatctagttatagggatgcccctcatgaccatttactt |
178 |
Q |
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|||||||| || | ||||||||||||||||||||||||| | || ||||||||||| ||| ||||||||| |
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| T |
43162870 |
agcaggtaaaatcagcttagacaattttccattatctagctctatggatgcccctcgtgatcatttactt |
43162939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 27398540 - 27398647
Alignment:
| Q |
9 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
108 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
27398540 |
gctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccattgctctcctttag |
27398639 |
T |
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| Q |
109 |
agcaggta |
116 |
Q |
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|| ||||| |
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| T |
27398640 |
aggaggta |
27398647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 20866867 - 20866760
Alignment:
| Q |
9 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||| ||| || |||| |||||||| |
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| T |
20866867 |
gctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgttctcctttaa |
20866768 |
T |
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| Q |
109 |
agcaggta |
116 |
Q |
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|||||||| |
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| T |
20866767 |
agcaggta |
20866760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 72; Significance: 5e-33; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 135611 - 135504
Alignment:
| Q |
9 |
gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||||| |
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| T |
135611 |
gctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgctctcctttaa |
135512 |
T |
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| Q |
109 |
agcaggta |
116 |
Q |
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|||||||| |
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|
| T |
135511 |
agcaggta |
135504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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