View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1325R-Insertion-2 (Length: 1131)
Name: NF1325R-Insertion-2
Description: NF1325R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1325R-Insertion-2 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 886; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 886; E-Value: 0
Query Start/End: Original strand, 8 - 970
Target Start/End: Original strand, 44014806 - 44015774
Alignment:
| Q |
8 |
atccaatatattttctatgctgaaattcagtttctgaaatggtatgaaagtccaaggataagagaaatcctcagctcctgacgcggaacctgatatcctc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44014806 |
atccaatatattttctatgctgaaattcagtttctgaaatggtatgaaagtccaaggataagagaaatcctcagctcctgacgcggaacctgatatcctc |
44014905 |
T |
|
| Q |
108 |
aaagccttttcaacattgtaccgatgattactacgtgttactagaatccacgacgcaatgacaattatggtaaccgaagctagaataattgtgatcatag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44014906 |
aaagccttttcaacattgtaccgatgattactacgtgttactagaatccacgacgcaatgacaattatggtaaccgaagctagaataattgtgatcatag |
44015005 |
T |
|
| Q |
208 |
ctatggtttttgcagattttaaaccattcttttgaatcagacttgaagaacatgtagtaccgtcaacggactgacacagatgccggttctgaagatatga |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44015006 |
ctatggtttttgcagattttaaaccattcttttgaatcagacttgaagaacatgtagtaccgtcaacggactgacacagatgccggttctgaagatatga |
44015105 |
T |
|
| Q |
308 |
actagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgagactagtaagagaaccaaga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44015106 |
actagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgagactagtaagagaaccaaga |
44015205 |
T |
|
| Q |
408 |
accttaattcctccaaaaagcatgttccttgaaagatcaagtgattgcaactgtgtcaaagcagacattgaatcaggtatttcaccaatgaatgaatttg |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
44015206 |
accttaattcctccaaaaagcatgttccttgaaagatcaagtgattgtaactgtgtcaaagcagacattgaatctggtatttcaccaatgaacgaatttg |
44015305 |
T |
|
| Q |
508 |
agctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattgtaactcaaatccaaaagagttagctt |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44015306 |
agctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattataactcaaatccaaaagagttagctt |
44015405 |
T |
|
| Q |
608 |
ctgtagatttctagcagattttggtattgagcctgttaataaattattgttgagaataagcttgttcaaatagctcaagttcccaaagctccaaggaatt |
707 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44015406 |
ctgtagatttctaacagattttggtattgagcctgttaataaattattgttgagaataagcttgttcaaatagctcaagttcccaaagctccaaggaatt |
44015505 |
T |
|
| Q |
708 |
tcacctgtcaaactgtttctactaagatcaagctgctccaaattttcaagctcaccaatcagggatggaatttctccgacgaggtagttgttatgagcat |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44015506 |
tcacctgtcaaactgtttctactaagatcaagctgctccaaattttcaagctcaccaatcagggatggaatttctccaccgaggtagttgttatgagcat |
44015605 |
T |
|
| Q |
808 |
ctaatagctcaagaactgtgatgttcgcaatctcaaccggtaatcttccggtgaaatgattcatgtacaaatcaagaaacac-agattctgcaactgtcc |
906 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
44015606 |
ctaatagctcaagaaccgtgatgttcgcaatctcaaccggtaatcttccggagaaatgattcatatacaaatcaagaaacacaagattctgcaactgtcc |
44015705 |
T |
|
| Q |
907 |
tatctctttagg-atctctcctgaaagctgattctctc--actctc-atct-accaaagattgacattt |
970 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |
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| T |
44015706 |
tatctctttaggaatctctcctgaaagctgattctctccaactctcaatctaaccaaagattgacattt |
44015774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 23 - 373
Target Start/End: Original strand, 38800389 - 38800753
Alignment:
| Q |
23 |
tatgctgaaattcagtttctgaaatggtatgaaagtccaaggataagagaaatcctcagctcctgacgcggaacctgatatcctcaaagccttttca--- |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||| || | |||||||||||||||||| ||||| |
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| T |
38800389 |
tatgctgaaattcagtttctgaaatgggatgaaagttcaagggtaagagaaatcctcagctcttgatgccggacctgatatcctcaaagctatttcaatc |
38800488 |
T |
|
| Q |
120 |
--acattgtaccgatgattactacgtgttactagaatccacgacgcaatgacaattatggtaaccgaagctagaataattgtgatcatagcta-tggttt |
216 |
Q |
| |
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| ||| || |||||||| ||| |||||||||||||| || ||| | || |||||||||| |||||||||||| || ||||||| || || ||| |
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| T |
38800489 |
ttatattatatagatgattattacaagttactagaatccaagatacaacaaaaactatggtaaccaaagctagaataaccgtcatcatagatattgtttt |
38800588 |
T |
|
| Q |
217 |
ttgcagattttaaaccattcttttgaatcagacttgaagaacatgtagtaccgtcaacggactga--------cacagatgccggttctgaagatatgaa |
308 |
Q |
| |
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|||| |||||||| ||||| |||||||||||| || || ||||||||| | | |||| ||| ||| |||| ||| |||| |||||||||||| |
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| T |
38800589 |
ttgctgattttaagccattattttgaatcagatttaaataacatgtagcagcatcaatggagtgatagtttggcacaaatgtaggttttgaagatatgaa |
38800688 |
T |
|
| Q |
309 |
ctagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagat |
373 |
Q |
| |
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|||||||||||| ||||||||||| | |||||||||||||||||||| || ||||||||| |||| |
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| T |
38800689 |
ctagaagttagacttttgaagaatcgtgttactggaataggacctgataaattgttgtagaagat |
38800753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 582 - 725
Target Start/End: Original strand, 38800931 - 38801073
Alignment:
| Q |
582 |
taactcaaatccaaaagagttagcttctgtagatttctagcagattttggtattgagcctgttaataaattattgttgagaataagcttgttcaaatagc |
681 |
Q |
| |
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|||||||||||||| |||||||||||||| | ||||||| |||||||||||||| | ||| | ||||||||||||| || | ||||||||| || |
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| T |
38800931 |
taactcaaatccaatagagttagcttctgcaaatttctaattgattttggtattgatcatgtaagcaaattattgttga-tatgaacttgttcaagtaat |
38801029 |
T |
|
| Q |
682 |
tcaagttcccaaagctccaaggaatttcacctgtcaaactgttt |
725 |
Q |
| |
|
| || || |||| ||||||||| ||||||| ||||||||||||| |
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| T |
38801030 |
ttaaatttccaatgctccaagggatttcacatgtcaaactgttt |
38801073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 38821048 - 38820966
Alignment:
| Q |
307 |
aactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgaga |
389 |
Q |
| |
|
||||||||||| || || ||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||||| |
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|
| T |
38821048 |
aactagaagttgaagattagaagaatggtgttactggaataggacctgagaaattgttgtataagatattctgggaagtgaga |
38820966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 503 - 679
Target Start/End: Original strand, 34765349 - 34765526
Alignment:
| Q |
503 |
atttgagctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattgtaactcaaatccaaaagagtt |
602 |
Q |
| |
|
|||||||||||||| |||||| ||||| | |||||| ||||||||| |||| |||| |||| || |||||||| || || ||||||||||||| |||| |
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| T |
34765349 |
atttgagctcaaatacaaacttattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagtt |
34765448 |
T |
|
| Q |
603 |
agcttctgtagatttctagcagattttggtattgagcctgttaataa-attattgttgagaataagcttgttcaaata |
679 |
Q |
| |
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|||||||| | |||| |||||||| ||||| ||| ||||||| |||||||||||||||||||||| ||||||| |
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| T |
34765449 |
agcttctgaaaatttggtacagattttcaaattgaacctattaataatattattgttgagaataagcttgctcaaata |
34765526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 12889 - 12940
Alignment:
| Q |
23 |
tatgctgaaattcagtttctgaaatggtatgaaagtccaaggataagagaaa |
74 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||||||| ||||||||| |
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| T |
12889 |
tatgctgaaattcaatttctgaaatgggatgaaagtccaagggtaagagaaa |
12940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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