View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1325R-Insertion-3 (Length: 1038)
Name: NF1325R-Insertion-3
Description: NF1325R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1325R-Insertion-3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 701; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 9 - 773
Target Start/End: Original strand, 37821392 - 37822156
Alignment:
| Q |
9 |
gattgtacatgttattgtggggtaaaagcaaagaagcaagagaggtcgataatatgaatgaaatggtgtctgcaaaagactctattcaatgtgattcaat |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37821392 |
gattgtacatgttattgtggggtaaaagcaaagaagcaagagaggtggataatatgaatgaaatagtgtctgcaaaagactctattcaatgtgattcaat |
37821491 |
T |
|
| Q |
109 |
tcccattgccaactcatctttgacttgcatccaaaaggagcatgacaagaagataccaattgttgcttctggtgtatcattaaatagcaacaatacttta |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37821492 |
tcccattgccaactcatctttgacttgcatccaaaaggagcatgacaagaagataccaattgttgcttctggtgtatcattaaatggcaacaatacttta |
37821591 |
T |
|
| Q |
209 |
ggaaaaattcaacaattaaacatttgaaagaactgtttcatatgattaaaattatatgcatgtatactttcacattgatatttttgaataataatggtga |
308 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37821592 |
ggaaaaattcaacaattaaacatttgaagaaactgtttcatatgattaaaattatatgcatgtatattttcacattgatatttttgaataataatggtga |
37821691 |
T |
|
| Q |
309 |
gtatatttccttacnnnnnnnnactgctaaatttgtaatatgtcctaacacaagttaccaagagtttgataataaacagaattatttatatttaggatca |
408 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821692 |
gtatatttccttacttttttttactgctaaatttgtaatatgtcctaacacaagttaccaagagtttgataataaacagaattatttatatttaggatca |
37821791 |
T |
|
| Q |
409 |
atatatactcattttaatttctctgtgtaaaaccttcatctataatgctccttgttttcgctacctccaggtcgggccctagggtcaaggggtctaaact |
508 |
Q |
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| T |
37821792 |
atatatactcattttaatttctctgtgtaaaaccttcatctataatgctccttgttttcgctacctccaggtcgggcccaagggtcaaggggtctaaact |
37821891 |
T |
|
| Q |
509 |
acgactttaggagaatttctctttgggtcttttgaaattttcataggcctcccaatatttccaaaatgcccttgttttacaccttcggcatttgcgaacc |
608 |
Q |
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| T |
37821892 |
atgactttaggagaatttccctttgggtcttttgaaattttcataggcctcccaatatttccaaaatgcccttgttttacaccttcggcatttgcgaacc |
37821991 |
T |
|
| Q |
609 |
gatccaattgggagataacttttgatccaatcagaagataattttttatgggcctgcaaaagctttgacataaatgagcatgacagaattggccgaacat |
708 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37821992 |
gatccaattgggagataacttttgatccaatcagaagataattttttatgggcctgcaaaagctttgacataaatgagcatgacagaattggcagaacat |
37822091 |
T |
|
| Q |
709 |
gctttatgttcaattggcctgatgatttcgtcttagacatagatttgtgttcaaaatgctccata |
773 |
Q |
| |
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| T |
37822092 |
gctttatgttcaattggcctgatgatttcgtcttagacatagatttgtgttcaaaatgctccata |
37822156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 782 - 1036
Target Start/End: Original strand, 37822142 - 37822395
Alignment:
| Q |
782 |
tcaaaatgctccatatcaaagcaatccgttaaaatatcaaattaaaatcattttgataaaccaacaatttaagttcattaacaaaacatgaaatcattcc |
881 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37822142 |
tcaaaatgctccatatcaaagcaatccgttaaaatattaaattaaaatcattttgataaaccaacaatttaagttcattaacaaaacatgaaatcattcc |
37822241 |
T |
|
| Q |
882 |
gagaaatgacaaaaacgatatataacgtcgcatgaaaacataaaaatgcaatcctaactactgagttgatcgctctaaaactcctcctcggtaactc--t |
979 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
37822242 |
gagaaataacaaaaacgatatataatgtcgcatgaaaacataaaaatgtaatcctaactactgagttgatcactctaaaa---ctcctcggtaactcctc |
37822338 |
T |
|
| Q |
980 |
cgtctaagcctcaattggtatttggtggcagacgtctgctatgcaaagcatccagag |
1036 |
Q |
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| T |
37822339 |
cgtctaagcctcaattggtatttggtggcagacgtctgctatgcaaagcatccagag |
37822395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 742 - 870
Target Start/End: Original strand, 24318845 - 24318976
Alignment:
| Q |
742 |
tagacatagatttgtgttcaaaatgctccataataaaacatcaaaatgctccatatcaaagca---atccgttaaaatatcaaattaaaatcattttgat |
838 |
Q |
| |
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|||||||| ||||||||| |||||||| ||||| |||||||||||||| |||||| |||| | || ||||||| |||| |||||||||||| | | |
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| T |
24318845 |
tagacatatatttgtgtttaaaatgcttcataagaaaacatcaaaatgttccataacaaaaaatatatatgttaaaacatcatattaaaatcattctaac |
24318944 |
T |
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| Q |
839 |
aaaccaacaatttaagttcattaacaaaacat |
870 |
Q |
| |
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||| |||||| || ||||||||||||||||| |
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| T |
24318945 |
aaaacaacaaattgtgttcattaacaaaacat |
24318976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 741 - 787
Target Start/End: Original strand, 25591045 - 25591091
Alignment:
| Q |
741 |
ttagacatagatttgtgttcaaaatgctccataataaaacatcaaaa |
787 |
Q |
| |
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||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
25591045 |
ttagacatatacttgtgttcaaaatgctccataataaaacatcaaaa |
25591091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 715 - 782
Target Start/End: Complemental strand, 8741519 - 8741448
Alignment:
| Q |
715 |
tgttcaattggcctgatgatttcgtcttagacatag----atttgtgttcaaaatgctccataataaaacat |
782 |
Q |
| |
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||||||||||||||||||| || |||||| ||||| |||||||||||||||| ||||||| ||||||| |
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| T |
8741519 |
tgttcaattggcctgatgactttgtcttaaacatacttaaatttgtgttcaaaatggtccataacaaaacat |
8741448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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