View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1325R-Insertion-4 (Length: 1039)
Name: NF1325R-Insertion-4
Description: NF1325R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1325R-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 924; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 924; E-Value: 0
Query Start/End: Original strand, 9 - 1027
Target Start/End: Original strand, 42392905 - 42393924
Alignment:
| Q |
9 |
agacaaatacttgaaaattgttaaaaactccagcaatgataaatggtgctctccgtaagtagaagctcattgaattgctattcttaacaatattgaagtt |
108 |
Q |
| |
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| T |
42392905 |
agacaaatacttgaaaattgttaaaaactctagcaatgatcaatggtgctctccgtaagtagaagctcgttgaattgctattcttaacaacattgaagtt |
42393004 |
T |
|
| Q |
109 |
ttgaacaattttcaagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatattgtaatatgaagagtgaatatagtaccc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |
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| T |
42393005 |
ttgaacaattttcaagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatatggtaatatgaatagtgaatatagtatcc |
42393104 |
T |
|
| Q |
209 |
aaatctatttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctgatacatc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42393105 |
aaatctatttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctaatacatc |
42393204 |
T |
|
| Q |
309 |
caacttttctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagcacatatc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393205 |
caacttttctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagcacatatc |
42393304 |
T |
|
| Q |
409 |
cttcttccagaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctaacggtttctccc |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42393305 |
cttcttccagaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctccc |
42393404 |
T |
|
| Q |
509 |
aaatggaagggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393405 |
aaatggaagggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatg |
42393504 |
T |
|
| Q |
609 |
aggcattagaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagtta |
708 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393505 |
agacattagaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagtta |
42393604 |
T |
|
| Q |
709 |
tctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatg |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
42393605 |
tctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaattcaacggtattggaggatg |
42393704 |
T |
|
| Q |
809 |
tgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggtattaagttcttcaacacgtgccttagggcacatgttagcattctcaaataaat |
908 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
42393705 |
tgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggtattaagttcttcaacgcacgccttagggcacatgttagcattctcaaataaat |
42393804 |
T |
|
| Q |
909 |
tttaatttgaatcagagttaaataaaccatatgccgcnnnnnnnngtgagaagacgct-aacataaatgtgtaacaaaggtagcataccaggagaagagc |
1007 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393805 |
tttaatttgaatcagagttaaacaaaccatataccgcaaaaaaaagtgagaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaagagc |
42393904 |
T |
|
| Q |
1008 |
cttcacgtgggtgcttgtga |
1027 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
42393905 |
cttcacgtgggtgcttgtga |
42393924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 100 - 838
Target Start/End: Original strand, 42376447 - 42377182
Alignment:
| Q |
100 |
attgaagttttgaacaatttt-caagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatattgtaatatgaagagtgaa |
198 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||| ||||| | ||||| ||||||||| |||||| |
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| T |
42376447 |
attgaagttttgaacaattttacaagcatcaacaatcgtagaatacacac---actttcccaacctaccaattgct-tatatgataatatgaatagtgaa |
42376542 |
T |
|
| Q |
199 |
tatagtacccaaatctatttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttct |
298 |
Q |
| |
|
|||| || | | |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||| |||||| |
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| T |
42376543 |
tataatattcgattctatttataaagatctggatttgacagtcgtggtgtgggtatggcaagcagaggtgtcttcttttttagaacaataccaaatttct |
42376642 |
T |
|
| Q |
299 |
ctgatacatccaacttttctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattcc |
398 |
Q |
| |
|
| || || |||| |||||||||||||| | ||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
42376643 |
ccgacacctccagattttctccttgaggaactgtccaatcaaacaagtgcacaagggtggctacaaagtacaaaaccgtcctctcagccattgctattcc |
42376742 |
T |
|
| Q |
399 |
agcacatatccttcttccagaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctaac |
498 |
Q |
| |
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||||| |||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
42376743 |
ggcacaaatccttcttccagagccaaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaattctagt |
42376842 |
T |
|
| Q |
499 |
ggtttctcccaaatggaagggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcac |
598 |
Q |
| |
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|| |||||||||| |||||||||||||||||||||||||||| | ||| |||| ||| |||| |||||||||||||||||| | |||||||||||||| |
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| T |
42376843 |
gggttctcccaaacataagggtctctatgaatagcccaaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcac |
42376942 |
T |
|
| Q |
599 |
ttgggcaatgaggcattagaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttc |
698 |
Q |
| |
|
||||||| ||||| | || ||||||||||| ||||| |||||||| ||||||||||| ||||| || ||||||| |||||||||||||||||||||||| |
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|
| T |
42376943 |
ttgggcagtgagggactaaaagtggaagtgcagggtgtaaacgaagagtttctttcatcactgcatgtaagtaggttagcttgtgaatatgagactcttc |
42377042 |
T |
|
| Q |
699 |
tactaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggta |
798 |
Q |
| |
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||||||||||||||| |||||||| | ||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| || |
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| T |
42377043 |
tactaagttatcttttccaaccacagtttctaactcctcttgaaccttcctcatcacttctggtttgttcatcatttctgccattacaaactcaattgtg |
42377142 |
T |
|
| Q |
799 |
ttggaggatgtgtctgatccaccaagtaccatgtcctgtt |
838 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
42377143 |
ttggaggatgtgtctgatccacccactaccatgtcctgtt |
42377182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 535 - 847
Target Start/End: Original strand, 42387228 - 42387539
Alignment:
| Q |
535 |
caaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggt |
634 |
Q |
| |
|
|||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||| |
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| T |
42387228 |
caaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgttgggt |
42387327 |
T |
|
| Q |
635 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttccaattc |
734 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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|
| T |
42387328 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttttgaatatgagactcttctactaagttatctttcccaaccacgatttccagttc |
42387427 |
T |
|
| Q |
735 |
ctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcc |
834 |
Q |
| |
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|||||||||||||||||||||| |||| |||| |||||||| ||| ||| ||||||||| || ||||||||||||||||||||||| | |||||||||| |
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|
| T |
42387428 |
ctcttgaaccttcctcattacttctgg-ttgtccatcatttatgctattacaaactcaattgtgttggaggatgtgtctgatccacccactaccatgtcc |
42387526 |
T |
|
| Q |
835 |
tgttcatacaaac |
847 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
42387527 |
tgttcatataaac |
42387539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 217 - 480
Target Start/End: Original strand, 42386957 - 42387220
Alignment:
| Q |
217 |
ttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctgatacatccaactttt |
316 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||| |||| |
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|
| T |
42386957 |
ttataaagatctggattagacagtcgtgttgtgggtatggcaagcaaaggcgtcttcttttttagaacgataccaaatttctctgatacatccatatttt |
42387056 |
T |
|
| Q |
317 |
ctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagcacatatccttcttcc |
416 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| ||||||||||| |||||||||||| ||||||||| |||||||||||| ||||| ||||||||||| |
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|
| T |
42387057 |
ctccttgaggaactgtccaatcaaacaagtgcacaagggtggctacaaagtacaaaaccgtcctctcagacattgctattccggcacaaatccttcttcc |
42387156 |
T |
|
| Q |
417 |
agaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaacctt |
480 |
Q |
| |
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||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42387157 |
agagccaaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaacctt |
42387220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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