View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1325R-Insertion-5 (Length: 651)
Name: NF1325R-Insertion-5
Description: NF1325R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1325R-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 651
Target Start/End: Complemental strand, 52797536 - 52796893
Alignment:
| Q |
8 |
atggaagactctctatgtccttttcttccattttcctatcagagcttattttgctccttagttccatttgcactttcaatagggttcttgggttgtgcag |
107 |
Q |
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| T |
52797536 |
atggaagactctctatgtccttttcttccattttcctatcagagcttattttgctccttagttccatttgcacttttgatagggttcttgggttgtgcag |
52797437 |
T |
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| Q |
108 |
aagctccgccatcgcccattctagtgtgcttgttgtcgtgtctgtccctgcagtgaacatttcctacaacacaataatattactatcaatgtcacaaact |
207 |
Q |
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| T |
52797436 |
aagctccgccatcgcccattctagtgtgcttgttgtcgtgtctgtccctgcagtgaacatttcctacaacacaataatattactatcaatgtcacaaact |
52797337 |
T |
|
| Q |
208 |
gccatgattcttctctctatcaatctttgtttattctctccatgatttgacataaattaactttttgtgatggttatcattctttaggagcatctcccat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
52797336 |
gccatgattcttctctctatcaatctttgtttattctctccatgatttgacataaattaactttttgtgatggttatcattctttagaagcatcttccat |
52797237 |
T |
|
| Q |
308 |
aaatttctaacatgcccagttccaacttatacctaaagtagttaaaaatggannnnnnnacgtccatttttacaatattttaatcttgctcttgcactta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52797236 |
aaatttctaacatgcccagttccaacttatacctaaagcaattaaaaatggatttttttacgtccatttttacaatattttaatcttgctcttgcactta |
52797137 |
T |
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| Q |
408 |
ttccaagtacttgaaattcgaatcttatcttataaaatacaaattcaaaaagagaactgatgtgaaaaattggcctgcatatatattttctataccaaat |
507 |
Q |
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| T |
52797136 |
ttccaagtacttgaaattcgaatcttatcttataaaagacaaattcaaaaagagaactgatgtgaaaaattagcctgcatatatcttttctataccaaat |
52797037 |
T |
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| Q |
508 |
atgaagttgactacttacaaagacaacaacgttaatagttcttgaagtaaaactgtagggcccgctgacgccatccccacgaaactgcaagagcacatcc |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52797036 |
atgaagttgactacttacaaagacaacaacgttaatagttcttgaagtaaaactgtagggcccgctgacaccatccccacgaaactgcaagagcacatcc |
52796937 |
T |
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| Q |
608 |
aagaagtctttactgtttccatttccaacagtatcattttccat |
651 |
Q |
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| T |
52796936 |
aagaagtctttactgtttccatttccaacaatatcattttccat |
52796893 |
T |
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