View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1325R-Insertion-8 (Length: 383)

Name: NF1325R-Insertion-8
Description: NF1325R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1325R-Insertion-8
NF1325R-Insertion-8
[»] chr5 (1 HSPs)
chr5 (9-383)||(3918322-3918696)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 3918322 - 3918696
Alignment:
Q  9 aaattatgcttgggtgcttccttgattcttgttttgaatgagcaggtgaagccacactagaactttgttcagaaggtggccggctaacacactgttcaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3918322 aaattatgcttgggtgcttccttgattcttgttttgaatgagcaggtgaagccacactagaactttgttcagaaggtggccggctaacacactgttcaaa 3918421  T
Q  109 aatattcctgtacatagcaagaacatgctgttcgcggcttgtaacctcttcttcaagcaattcaatttcagtaatcaagtcttttgtctaaaaaagggaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3918422 aatattcctgtacatagcaagaacatgctgttcgcggcttgtaacctcttcttcaagcaactcaatttcagtaatcaagtcttttgtctaaaaaagggaa 3918521  T
Q  209 aaattagaaataattaatttcacacaacatgaacttataggaaccatagctttcatgaaaatattatgttgtgcaatggcatccccttgccaatcagtat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3918522 aaattagaaataattaatttcacacaacatgaacttataggaaccatagctttcatgaaaatattatgttgtgcaatggcatccccttgccaatcagtat 3918621  T
Q  309 ttaaaatttcaggaacgagtctctttatgattatcggctatcatcaaactaccattctttacattagaattagct 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3918622 ttaaaatttcaggaacgagtctctttatgattatcggctatcatcaaactaccattctttacattagaattagct 3918696  T

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