View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1325R-Insertion-9 (Length: 300)

Name: NF1325R-Insertion-9
Description: NF1325R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1325R-Insertion-9
NF1325R-Insertion-9
[»] chr2 (1 HSPs)
chr2 (9-300)||(39076970-39077261)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 39077261 - 39076970
Alignment:
Q  9 cttccaccatggaatccaattccaaatgcagcagaagagttacaagaggaagagaataataataaaaatgcagtagaaacaaatgaaatggttattgcag 108  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39077261 cttccaccatggaatccaattccaaatgcaacagaagagttacaagaggaagagaataataataataatgcagtagaaacaaatgaaatggttattgcag 39077162  T
Q  109 cagaacaatcagaatcttctggttacaatttgcagcagaacaatcatcacaaccataaccattcaggtttcattcaatcaactattgataatgatgctat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39077161 cagaacaatcagaatcttctggttacaatttgcagcagaacaatcatcataaccataaccattcaggtttcattcaatcaactattgataatgatgctat 39077062  T
Q  209 agcattttttccaacaacttctgttggtgaatctatgaattttcaaagctactcttctgatataatctcaagaacaaacaactcaacacagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39077061 agcattttttccaacaacttctgttggtgaatctatgaattttcaaagctactcttctgatataatctcaagaacaaacaactcaacacagg 39076970  T

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