View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1325_high_1 (Length: 445)
Name: NF1325_high_1
Description: NF1325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1325_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 414
Target Start/End: Complemental strand, 49265778 - 49265395
Alignment:
| Q |
30 |
gaatatagtattgggaatagcaaaggggttggaatatatgcataaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggt |
129 |
Q |
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| T |
49265778 |
gaatatagcattgggaatagcaaaggggttggaatatatgcataaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggt |
49265679 |
T |
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| Q |
130 |
gaaaattatcatgccaagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggtt |
229 |
Q |
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| T |
49265678 |
gaaaattatgatgccaagttatcagattttgggttcgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggtt |
49265579 |
T |
|
| Q |
230 |
attgtgcccctgaatatcttatgaccggacaactaactataaaatctgatgtgtatagctatggagtggtcatgctcgaacttatttcaggacgtagggc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49265578 |
attgtgcccctgaatatcttatgaccggacaactaactattaaatctgatgtgtatagctatggagtggtcatgctcgaacttatttcaggacgcagggc |
49265479 |
T |
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| Q |
330 |
tcttgataatacacgacctcaaggagagcgtagtcttgttgaatgggtaagttcctcacttaataaactctactactacactaga |
414 |
Q |
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| T |
49265478 |
tcttgataatacacgaccgcaaggagagcgtagtcttgttgaatgggtaagttcctcgcttaattaa-taaactactacactaga |
49265395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 48 - 267
Target Start/End: Original strand, 6603523 - 6603745
Alignment:
| Q |
48 |
agcaaaggggttggaatatatgcat---aaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggtgaaaattatcatgcc |
144 |
Q |
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| T |
6603523 |
agcaaagggattggaatacttgcatgacaaggcaaatccccctgtgatctatagagacttaaaatcatctaacatcctcctagatgaaggttttcatccc |
6603622 |
T |
|
| Q |
145 |
aagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggttattgtgcccctgaat |
244 |
Q |
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|||||||||||||||||| | ||||||||||| ||| ||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||| || | |
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| T |
6603623 |
aagttatcagattttgggctggcaaaacttggtccagttggtgataagactcatgtatccacacgtgtaatgggaacatatggctattgtgccccggagt |
6603722 |
T |
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| Q |
245 |
atcttatgaccggacaactaact |
267 |
Q |
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| T |
6603723 |
atgctatgactggtcaactaact |
6603745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 40923808 - 40923910
Alignment:
| Q |
134 |
attatcatgccaagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggttattg |
233 |
Q |
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|||||||| |||||||||| |||||||| || |||||| | || ||||| ||||||||||||||||| || ||| ||| ||||||||||||| || || |
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| T |
40923808 |
attatcatcccaagttatccgattttggcttggcaaaagtaggtccaatcggtgatatgactcatgtttcaacaagagttatgggaacatatggctactg |
40923907 |
T |
|
| Q |
234 |
tgc |
236 |
Q |
| |
|
||| |
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| T |
40923908 |
tgc |
40923910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 13172350 - 13172452
Alignment:
| Q |
134 |
attatcatgccaagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggttattg |
233 |
Q |
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|||||||| |||||||||| ||||| || || |||||| | || ||||||||||||| ||||||||| || ||| ||| ||||||||||||| ||||| |
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| T |
13172350 |
attatcatcccaagttatctgatttcggcttggcaaaagtaggtccaattggtgataagactcatgtgtcaacaagggtaatgggaacatatgggtattg |
13172449 |
T |
|
| Q |
234 |
tgc |
236 |
Q |
| |
|
||| |
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|
| T |
13172450 |
tgc |
13172452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 52960296 - 52960224
Alignment:
| Q |
215 |
tgggaacatatggttattgtgcccctgaatatcttatgaccggacaactaactataaaatctgatgtgtatag |
287 |
Q |
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||||||| |||||||| ||||| ||||||||| |||||| |||||||||||| ||||||| ||||| ||||| |
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| T |
52960296 |
tgggaacttatggttactgtgctcctgaatatgctatgactggacaactaactgtaaaatcagatgtatatag |
52960224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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