View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1325_high_2 (Length: 376)

Name: NF1325_high_2
Description: NF1325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1325_high_2
NF1325_high_2
[»] chr4 (14 HSPs)
chr4 (23-370)||(15502741-15503087)
chr4 (220-303)||(25283800-25283883)
chr4 (255-338)||(32894953-32895036)
chr4 (220-278)||(171696-171754)
chr4 (255-317)||(25411651-25411712)
chr4 (255-336)||(40339463-40339544)
chr4 (220-307)||(46701964-46702051)
chr4 (230-280)||(43955864-43955914)
chr4 (223-300)||(9981110-9981187)
chr4 (264-305)||(36505769-36505810)
chr4 (245-294)||(39390906-39390955)
chr4 (246-294)||(22438583-22438631)
chr4 (217-301)||(44307907-44307990)
chr4 (256-300)||(47110746-47110790)
[»] scaffold0530 (1 HSPs)
scaffold0530 (220-355)||(7569-7708)
[»] chr5 (5 HSPs)
chr5 (220-338)||(12075863-12075980)
chr5 (211-337)||(16514137-16514263)
chr5 (266-336)||(14123025-14123094)
chr5 (247-300)||(9042440-9042493)
chr5 (223-294)||(2897954-2898025)
[»] chr8 (6 HSPs)
chr8 (265-332)||(9106807-9106874)
chr8 (221-355)||(11459728-11459865)
chr8 (258-335)||(8523962-8524038)
chr8 (223-300)||(16583193-16583270)
chr8 (219-294)||(26501224-26501299)
chr8 (255-317)||(28798990-28799051)
[»] chr3 (9 HSPs)
chr3 (217-336)||(14336897-14337016)
chr3 (221-337)||(21808942-21809058)
chr3 (217-300)||(49066280-49066363)
chr3 (223-300)||(38108775-38108852)
chr3 (255-334)||(43985717-43985796)
chr3 (223-300)||(30715877-30715954)
chr3 (223-300)||(44846959-44847036)
chr3 (220-334)||(29240596-29240709)
chr3 (264-304)||(44810656-44810696)
[»] scaffold0174 (1 HSPs)
scaffold0174 (219-303)||(33069-33153)
[»] chr7 (6 HSPs)
chr7 (219-303)||(21166372-21166455)
chr7 (242-300)||(3614403-3614461)
chr7 (254-300)||(8300047-8300093)
chr7 (217-279)||(18791926-18791988)
chr7 (223-304)||(3615315-3615396)
chr7 (256-300)||(47317784-47317828)
[»] chr2 (3 HSPs)
chr2 (218-336)||(25297249-25297366)
chr2 (255-307)||(13798817-13798869)
chr2 (256-300)||(31854233-31854277)
[»] chr6 (4 HSPs)
chr6 (220-307)||(6979006-6979093)
chr6 (213-336)||(12120158-12120279)
chr6 (223-299)||(5613798-5613874)
chr6 (267-336)||(25936161-25936230)
[»] chr1 (6 HSPs)
chr1 (220-294)||(18239451-18239525)
chr1 (217-338)||(38929843-38929960)
chr1 (255-336)||(42486403-42486483)
chr1 (219-338)||(34123542-34123660)
chr1 (225-280)||(23603239-23603294)
chr1 (220-300)||(18981483-18981563)
[»] scaffold0146 (1 HSPs)
scaffold0146 (256-300)||(32326-32370)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 370
Target Start/End: Complemental strand, 15503087 - 15502741
Alignment:
Q  23 tcagattatacattcattaaataaattttaatcgatctcagccaatgatatagattggaaggatgagatcaattgctgtgtgacgcagtaactgcagcca 122  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15503087 tcagattatacattcattaaataaattttaatcgatctcaaccaatgatatagatcggaaggatgagatcaattgctgtgtgacgcagtaactgcagcca 15502988  T
Q  123 atctttttccagtaaccaaaaccctagttaattctcttacatggcttcatttccatatcagtatggatattagttaaaagaaagataattacaatttgac 222  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15502987 atctttttccggtaaccaaaaccctagttaattctcttacatggcttcatttccatatcagtatggatattagttaaaagaaagataattacaatttgac 15502888  T
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagagaccc 322  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  15502887 aattgcttttttgacattcaatacttcctagtaacacaagtaaaatactaaaataccccaagcggtagttaactaccgctgactttataactagagaccc 15502788  T
Q  323 gacagcagttaactgcgggttttttggtcatttcaaagttcatctcac 370  Q
    |||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  15502787 gacagcagttaactgcgggt-ttttggtcagttcaaagttcaactcac 15502741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 25283883 - 25283800
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctg 303  Q
    ||||||||||||||| |||||||  ||||| || ||||||||| ||| |||||||||||||| |||||||||||| ||||||||    
T  25283883 gacaattgcttttttaacattcagaagttcttaataacacaagtaaattactaaaatacccctagcggtagttaactaccgctg 25283800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 338
Target Start/End: Complemental strand, 32895036 - 32894953
Alignment:
Q  255 aacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagagacccgacagcagttaactgc 338  Q
    |||||||| ||||||||||||||| | || |||||||||| |||||||||||||||||||| | | |||||||| |||||||||    
T  32895036 aacacaagtaaaatactaaaatactcacaacggtagttaactaccgctgactttataactaaaaaaccgacagctgttaactgc 32894953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 171696 - 171754
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatac 278  Q
    |||||||||||||||||||||||  |||||||| ||||||||| ||| |||||||||||    
T  171696 gacaattgcttttttgacattcagaagttcctaataacacaagtaaattactaaaatac 171754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 25411712 - 25411651
Alignment:
Q  255 aacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactaga 317  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||| ||| |||||||||||    
T  25411712 aacacaagtaaaatactaaaatacctccagcggtagttaactaccgcagac-ttataactaga 25411651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 40339463 - 40339544
Alignment:
Q  255 aacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactag-agacccgacagcagttaact 336  Q
    |||||||| |||||||||| ||||| |||||||||||||| ||  |||||| |||||||||| | |||||||| |||||||||    
T  40339463 aacacaagtaaaatactaacatacctccagcggtagttaactattgctgac-ttataactagaaaacccgacaacagttaact 40339544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 46701964 - 46702051
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactt 307  Q
    ||||||||||||| |||  ||||||| ||||||  |||||| | | |||| ||||||| |  ||||||||||||| ||||||||||||    
T  46701964 gacaattgcttttctgattttcaatacttcctaaaaacacaggtataatattaaaatatcatcagcggtagttaactaccgctgactt 46702051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 43955864 - 43955914
Alignment:
Q  230 tttttgacattcaatagttcctagtaacacaagcaaaatactaaaataccc 280  Q
    |||||||| ||||||| ||||||  |||||||| |||||||||||||||||    
T  43955864 tttttgactttcaatacttcctaaaaacacaagtaaaatactaaaataccc 43955914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 9981110 - 9981187
Alignment:
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    ||||||||||||||||   |||| |||||| | ||||||| |||||||  |||| ||  |||||||||||||||||||    
T  9981110 aattgcttttttgacaaggaatacttcctattgacacaagtaaaatacgtaaatgccttcagcggtagttaattaccg 9981187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 36505769 - 36505810
Alignment:
Q  264 aaaatactaaaatacccccagcggtagttaattaccgctgac 305  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  36505769 aaaatacttaaatacccccagcggtagttaactaccgttgac 36505810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 39390955 - 39390906
Alignment:
Q  245 agttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaa 294  Q
    |||||||| ||||||||  |||||||| ||||||||| ||||||||||||    
T  39390955 agttcctattaacacaaataaaatacttaaatacccctagcggtagttaa 39390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 22438631 - 22438583
Alignment:
Q  246 gttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaa 294  Q
    ||||||| | ||||||| |||||||  ||||||||||||||||||||||    
T  22438631 gttcctattgacacaagtaaaatacataaatacccccagcggtagttaa 22438583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 44307990 - 44307907
Alignment:
Q  217 tttgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgc 301  Q
    ||||| ||||||||||||||| | ||| |||||||| ||| ||| | |||   |||||||| |||||||||||||||| ||||||    
T  44307990 tttgaaaattgcttttttgacttccaaaagttcctaataatacatggaaatgtctaaaata-ccccagcggtagttaactaccgc 44307907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 47110790 - 47110746
Alignment:
Q  256 acacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    ||||||| |||||||| ||||||||| |||||||||||| |||||    
T  47110790 acacaagtaaaatactgaaatacccctagcggtagttaactaccg 47110746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 7708 - 7569
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagaga 319  Q
    ||||||||| ||||||||||||||||| |||||  |||||||| ||||||| |||||||||| | |||||||||| |||||||||||||||||||||| |    
T  7708 gacaattgcatttttgacattcaatagatcctataaacacaagtaaaatacaaaaataccccgaacggtagttaactaccgctgactttataactagaaa 7609  T
Q  320 cccgacagcagttaactgc----gggttttttggtcattt 355  Q
    ||| |||||||||||||||    |||||||||||||||||    
T  7608 cccaacagcagttaactgccgctgggttttttggtcattt 7569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 338
Target Start/End: Original strand, 12075863 - 12075980
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagaga 319  Q
    ||||||||||||| |||| ||||||| ||||||  |||||||| |||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |    
T  12075863 gacaattgcttttctgactttcaatacttcctaaaaacacaagtaaaatactaaaatacctccagcggtagttaactaccgctgac-ttataactagaaa 12075961  T
Q  320 cccgacagcagttaactgc 338  Q
     ||| ||||||||||||||    
T  12075962 accggcagcagttaactgc 12075980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 16514137 - 16514263
Alignment:
Q  211 ttacaatttgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttat 310  Q
    ||||| || |||||||||| || | |||| ||| | ||||||  |||||||| |||||||||||| |||   |||||||||||| |||||||||||||||    
T  16514137 ttacacttagacaattgctattctaacatccaaaaattcctaaaaacacaagtaaaatactaaaacacctttagcggtagttaactaccgctgactttat 16514236  T
Q  311 aactagagacccgacagcagttaactg 337  Q
    ||||||| |||||||| ||||||||||    
T  16514237 aactagaaacccgacaacagttaactg 16514263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 14123025 - 14123094
Alignment:
Q  266 aatactaaaatacccccagcggtagttaattaccgctgactttataactagagacccgacagcagttaact 336  Q
    ||||||||||||| ||||||||||||||| |||||||| | ||||||||||| | ||| || |||||||||    
T  14123025 aatactaaaatactcccagcggtagttaactaccgctggc-ttataactagaaaaccggcaacagttaact 14123094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 9042493 - 9042440
Alignment:
Q  247 ttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    |||||| ||||||||| |||||| | |||||||||||||||||||||| |||||    
T  9042493 ttcctattaacacaagtaaaatatttaaatacccccagcggtagttaactaccg 9042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 2897954 - 2898025
Alignment:
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaa 294  Q
    |||||||||||||||||| |||| |||||| | ||||||| |||  || ||| |||| ||||||||||||||    
T  2897954 aattgcttttttgacattgaatatttcctattgacacaagtaaatgaccaaattacctccagcggtagttaa 2898025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 9106874 - 9106807
Alignment:
Q  265 aaatactaaaatacccccagcggtagttaattaccgctgactttataactagagacccgacagcagtt 332  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  9106874 aaatactaaaataccctcagcggtagttaactaccgctgactttataactagaaacccgacatcagtt 9106807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 355
Target Start/End: Original strand, 11459728 - 11459865
Alignment:
Q  221 acaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagag-a 319  Q
    |||||||||||| |||| ||||||| | ||||  |||||||| |||||||||||||| | | ||| |||||||| |||||||||| |  ||||||||| |    
T  11459728 acaattgcttttctgactttcaatact-cctaaaaacacaagtaaaatactaaaatatctctagctgtagttaactaccgctgac-tcgtaactagagaa 11459825  T
Q  320 cccgacagcagttaactgc----gggttttttggtcattt 355  Q
     ||| ||||||||||||||    |||||||||||||||||    
T  11459826 accggcagcagttaactgccgctgggttttttggtcattt 11459865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 8524038 - 8523962
Alignment:
Q  258 acaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagagacccgacagcagttaac 335  Q
    ||||| |||||||||||| ||||| | |  ||||||| |||| ||||||||||| ||||| |||||||||||||||||    
T  8524038 acaagtaaaatactaaaacaccccaa-caatagttaactaccactgactttatagctagaaacccgacagcagttaac 8523962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 16583193 - 16583270
Alignment:
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    |||||||||||||||||  |||| |||||| | ||||||| ||  ||||||||  ||||||||||||||||| |||||    
T  16583193 aattgcttttttgacatggaatacttcctattgacacaagtaatttactaaaaagcccccagcggtagttaactaccg 16583270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 26501224 - 26501299
Alignment:
Q  219 tgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaa 294  Q
    |||||||||||||||||||||| || | ||||||  |||| ||| ||| ||| |||||||||||| | ||||||||    
T  26501224 tgacaattgcttttttgacatttaaaacttcctaaaaacataagtaaagtacgaaaatacccccaacagtagttaa 26501299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 28799051 - 28798990
Alignment:
Q  255 aacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactaga 317  Q
    |||||| | ||||||||||||| ||||||| | ||||||| |||||||||| |||||||||||    
T  28799051 aacacatgtaaaatactaaaatgcccccagtgatagttaactaccgctgac-ttataactaga 28798990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 336
Target Start/End: Original strand, 14336897 - 14337016
Alignment:
Q  217 tttgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactag 316  Q
    |||||||||||||||||| ||||   | | ||||||  |||||||  |||||||||||||||  ||| |||||||||| ||||||||||||||||||||     
T  14336897 tttgacaattgcttttttaacatcataaacttcctaaaaacacaaataaaatactaaaatacttccaacggtagttaactaccgctgactttataactaa 14336996  T
Q  317 agacccgacagcagttaact 336  Q
    | ||||| ||||||||||||    
T  14336997 aaacccggcagcagttaact 14337016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 21809058 - 21808942
Alignment:
Q  221 acaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagagac 320  Q
    |||||||||||||||||||| || | ||||||  |||||||| ||| ||| ||||||| | ||||||||||||| |||||||| ||| ||| ||||| |     
T  21809058 acaattgcttttttgacatttaaaacttcctaaaaacacaagtaaagtacgaaaatactctcagcggtagttaactaccgctggcttgatagctagaaaa 21808959  T
Q  321 ccgacagcagttaactg 337  Q
    ||| |||||||||||||    
T  21808958 ccggcagcagttaactg 21808942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 49066363 - 49066280
Alignment:
Q  217 tttgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    |||||||||| |||||||||||||||| |||| ||| |||| |||| ||| |||||||||||| ||||||| |||||| |||||    
T  49066363 tttgacaattacttttttgacattcaaaagtttctaataacgcaagtaaattactaaaatacctccagcggcagttaactaccg 49066280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 38108775 - 38108852
Alignment:
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    |||||||||||||||| | || |||||||| | ||||||| |||||||| ||||||| |||||||||||||| |||||    
T  38108775 aattgcttttttgacaataaaaagttcctattgacacaagtaaaatacttaaatacctccagcggtagttaactaccg 38108852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 334
Target Start/End: Original strand, 43985717 - 43985796
Alignment:
Q  255 aacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagagacccgacagcagttaa 334  Q
    |||||||| ||| ||||||||||| ||||||||||||||| ||  |||| || |||||||||| | ||| ||||||||||    
T  43985717 aacacaagtaaattactaaaatactcccagcggtagttaactattgctggctctataactagaaaaccggcagcagttaa 43985796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 30715877 - 30715954
Alignment:
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    ||||||||||||||||    | |||||||| | ||||||| |||||||  |||||||||||||||||||||| |||||    
T  30715877 aattgcttttttgacaaatgaaagttcctattgacacaagtaaaatacataaatacccccagcggtagttaactaccg 30715954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 44846959 - 44847036
Alignment:
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    |||||||||| ||||||| || | |||  | ||||||||| |||||||| ||||||| |||||||||||||| |||||    
T  44846959 aattgcttttctgacattgaaaacttcacattaacacaagtaaaatacttaaatacctccagcggtagttaactaccg 44847036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 334
Target Start/End: Original strand, 29240596 - 29240709
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagaga 319  Q
    ||||||||||||| |||| ||||||| ||||||| || | ||| |||||||||||||| |    | ||||||||| |||  ||||| ||||||||| |||    
T  29240596 gacaattgcttttctgactttcaatacttcctagaaatataagtaaaatactaaaatatctatggtggtagttaactacaactgac-ttataactaaaga 29240694  T
Q  320 cccgacagcagttaa 334  Q
     |||||| |||||||    
T  29240695 accgacatcagttaa 29240709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 44810696 - 44810656
Alignment:
Q  264 aaaatactaaaatacccccagcggtagttaattaccgctga 304  Q
    |||||||| ||||||| |||||||||||||| |||||||||    
T  44810696 aaaatacttaaatacctccagcggtagttaactaccgctga 44810656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 33153 - 33069
Alignment:
Q  219 tgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctg 303  Q
    |||||||||||||||| |||||||||||||||||| || | ||| |||||||||||||||| |||| ||||||||| | ||||||    
T  33153 tgacaattgcttttttaacattcaatagttcctagaaatataagtaaaatactaaaatacctccagtggtagttaactgccgctg 33069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 21166372 - 21166455
Alignment:
Q  219 tgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctg 303  Q
    |||||||||||||| |||| ||||||| ||||||  |||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  21166372 tgacaattgcttttctgac-ttcaatacttcctaaaaacacaagtaaaatactaaaatacccccagcggtagttaactgccgctg 21166455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 3614403 - 3614461
Alignment:
Q  242 aatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    |||| |||||| ||||||||| |||||||  |||| ||||||||||||||||| |||||    
T  3614403 aatacttcctattaacacaagtaaaatacgtaaatgcccccagcggtagttaactaccg 3614461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 8300093 - 8300047
Alignment:
Q  254 taacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    ||||||||| ||| || |||||||||||||||||||||||| |||||    
T  8300093 taacacaagtaaattagtaaaatacccccagcggtagttaaataccg 8300047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 18791926 - 18791988
Alignment:
Q  217 tttgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacc 279  Q
    ||||| ||||| |||||||||||| |||| ||||||  |||||||| |||||||| |||||||    
T  18791926 tttgaaaattgtttttttgacattgaatacttcctaaaaacacaagtaaaatacttaaatacc 18791988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 3615396 - 3615315
Alignment:
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctga 304  Q
    |||||||||||||||| | |||| |||||| | ||||||  |||||||  |||| |||||| |||||||||| || ||||||    
T  3615396 aattgcttttttgacaatgaatacttcctattgacacaaataaaatacgtaaatgcccccaacggtagttaactatcgctga 3615315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 47317828 - 47317784
Alignment:
Q  256 acacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    ||||||| |||||||| |||| ||||||||||||||||| |||||    
T  47317828 acacaagtaaaatacttaaatgcccccagcggtagttaactaccg 47317784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 25297249 - 25297366
Alignment:
Q  218 ttgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactaga 317  Q
    ||||||||||||||||| ||||  || | ||||||  |||||||  ||||||||||||||| | | ||||||||||| |||||||||| |||||||||||    
T  25297249 ttgacaattgcttttttaacatcaaaaacttcctaaaaacacaaataaaatactaaaatactctcggcggtagttaactaccgctgac-ttataactaga 25297347  T
Q  318 gacccgacagcagttaact 336  Q
     | | ||||||||||||||    
T  25297348 aaactgacagcagttaact 25297366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 13798817 - 13798869
Alignment:
Q  255 aacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactt 307  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  13798817 aacaaaagcaaaatactaaaatacccccagcagtagttaactaccgctgactt 13798869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 31854277 - 31854233
Alignment:
Q  256 acacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    ||||||| |||||||| ||||| |||||||| |||||||||||||    
T  31854277 acacaagtaaaatactgaaatatccccagcgatagttaattaccg 31854233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 6979093 - 6979006
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactt 307  Q
    ||||||||||||| |||| || |||| || |||  |||||||| |||||||||||||| | |||||||||||||||||| | ||||||    
T  6979093 gacaattgcttttctgacttttaatactttctaaaaacacaagtaaaatactaaaatatctccagcggtagttaattacggatgactt 6979006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 336
Target Start/End: Complemental strand, 12120279 - 12120158
Alignment:
Q  213 acaatttgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataa 312  Q
    |||| |||| |||||||||||| |||||  | | ||||||  |||||||| |||||| ||||||| |||||||||||||||| ||||||| |  ||||||    
T  12120279 acaagttgataattgcttttttaacattataaacttcctaaaaacacaagtaaaatattaaaata-ccccagcggtagttaactaccgct-agcttataa 12120182  T
Q  313 ctagagacccgacagcagttaact 336  Q
    ||||| | |||| || ||||||||    
T  12120181 ctagaaaaccgataggagttaact 12120158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 5613798 - 5613874
Alignment:
Q  223 aattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattacc 299  Q
    ||||||||||||||||    | |||||||| | || |||| |||||||| |||||||||||||||||||||| ||||    
T  5613798 aattgcttttttgacaaaggaaagttcctattgacccaagtaaaatacttaaatacccccagcggtagttaactacc 5613874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 336
Target Start/End: Complemental strand, 25936230 - 25936161
Alignment:
Q  267 atactaaaatacccccagcggtagttaattaccgctgactttataactagagacccgacagcagttaact 336  Q
    ||||||||||| | ||| || |||||||||| |||||||||| |||||||| | |  |||||||||||||    
T  25936230 atactaaaatatctccaacgatagttaattaacgctgactttttaactagaaatctaacagcagttaact 25936161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 18239451 - 18239525
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaa 294  Q
    ||||||||||||||||||||  || | |||||| | ||||||| |||||||||||||||||||| ||| ||||||    
T  18239451 gacaattgcttttttgacatagaaaacttcctattgacacaagtaaaatactaaaatacccccaacggcagttaa 18239525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 38929843 - 38929960
Alignment:
Q  217 tttgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactag 316  Q
    |||||||||||||||||| |||||||||||||||||  |||||||| ||||| ||||||||  |  | |||||||||||| ||| |||| |||||||||     
T  38929843 tttgacaattgcttttttaacattcaatagttccta--aacacaagtaaaatcctaaaata-tcttaacggtagttaattgccgttgac-ttataactat 38929938  T
Q  317 agacccgacagcagttaactgc 338  Q
    | | ||| ||||||||| ||||    
T  38929939 aaaaccggcagcagttacctgc 38929960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 42486403 - 42486483
Alignment:
Q  255 aacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagagacccgacagcagttaact 336  Q
    |||||||| |||||||||||||||| || ||||||||||| ||| |||| | ||||||||||| | ||| ||||||||||||    
T  42486403 aacacaagtaaaatactaaaatacctcctgcggtagttaactactgctggc-ttataactagaaaaccggcagcagttaact 42486483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 338
Target Start/End: Original strand, 34123542 - 34123660
Alignment:
Q  219 tgacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccgctgactttataactagag 318  Q
    ||||||||| | || |||| ||||||| ||||||  |||||||| |||||| ||||||||||| | |||||||||| |||| || || |||||  ||||     
T  34123542 tgacaattgttgttctgactttcaatacttcctaaaaacacaagtaaaatattaaaatacccctaacggtagttaactaccactaac-ttatagttagaa 34123640  T
Q  319 acccgacagcagttaactgc 338  Q
    | ||| ||||||||||||||    
T  34123641 aaccggcagcagttaactgc 34123660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 23603239 - 23603294
Alignment:
Q  225 ttgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaataccc 280  Q
    ||||||||||||||||||||||||||||  |||||| | |||| ||||||| ||||    
T  23603239 ttgcttttttgacattcaatagttcctataaacacatgtaaaagactaaaaaaccc 23603294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 18981483 - 18981563
Alignment:
Q  220 gacaattgcttttttgacattcaatagttcctagtaacacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    ||||||||||||||||||||  || | ||||||   ||||||| |||||||| ||||  |||||||| ||||||| |||||    
T  18981483 gacaattgcttttttgacataaaaaacttcctaaagacacaagtaaaatacttaaatgtccccagcgatagttaactaccg 18981563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 32370 - 32326
Alignment:
Q  256 acacaagcaaaatactaaaatacccccagcggtagttaattaccg 300  Q
    ||||||| |||||||| |||| ||||||||||||||||| |||||    
T  32370 acacaagtaaaatacttaaatgcccccagcggtagttaactaccg 32326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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