View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1325_low_3 (Length: 334)

Name: NF1325_low_3
Description: NF1325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1325_low_3
NF1325_low_3
[»] chr8 (2 HSPs)
chr8 (94-265)||(6348454-6348625)
chr8 (262-294)||(28249845-28249877)
[»] chr2 (2 HSPs)
chr2 (258-291)||(5935260-5935293)
chr2 (260-291)||(34951111-34951142)
[»] chr3 (2 HSPs)
chr3 (260-302)||(8735025-8735067)
chr3 (260-302)||(9087266-9087308)
[»] chr7 (1 HSPs)
chr7 (265-302)||(114376-114413)
[»] chr6 (2 HSPs)
chr6 (265-302)||(2539439-2539476)
chr6 (265-294)||(31721916-31721945)
[»] chr1 (2 HSPs)
chr1 (265-302)||(12523163-12523200)
chr1 (258-291)||(49852816-49852849)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 94 - 265
Target Start/End: Complemental strand, 6348625 - 6348454
Alignment:
Q  94 acattgtcatgctttaatttgcctttacgagtcaaagttcgtttgccacttcccttctcattctcgttttctgaattagtggtcttttatcttgaaaatg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6348625 acattgtcatgctttaatttgcctttacgagtcaaagttcgtttgccacttcccttctcattctcgttttctgaattagtggtcttttatcttgaaaatg 6348526  T
Q  194 acaagattaagaaaattatcggttgtaaaaatagagaataatcattggcaaagctctctgactattgagttt 265  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  6348525 acaagattaagaaaattatcgggtgtaaaactagagaataatcattggcaaagctctctgactattgggttt 6348454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 28249877 - 28249845
Alignment:
Q  262 gttttactttttccaccctatgtctttccttgc 294  Q
    |||||||||||||||||||||| ||||||||||    
T  28249877 gttttactttttccaccctatgcctttccttgc 28249845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 5935260 - 5935293
Alignment:
Q  258 ttgagttttactttttccaccctatgtctttcct 291  Q
    ||||||||||||||||||||||||||||||||||    
T  5935260 ttgagttttactttttccaccctatgtctttcct 5935293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 291
Target Start/End: Complemental strand, 34951142 - 34951111
Alignment:
Q  260 gagttttactttttccaccctatgtctttcct 291  Q
    ||||||||||||||||||||||||||||||||    
T  34951142 gagttttactttttccaccctatgtctttcct 34951111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 8735025 - 8735067
Alignment:
Q  260 gagttttactttttccaccctatgtctttccttgcacgtccta 302  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  8735025 gagttttacttttctcacactatgtctttccttgcacgtccta 8735067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 9087266 - 9087308
Alignment:
Q  260 gagttttactttttccaccctatgtctttccttgcacgtccta 302  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  9087266 gagttttacttttctcacactatgtctttccttgcacgtccta 9087308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 114413 - 114376
Alignment:
Q  265 ttactttttccaccctatgtctttccttgcacgtccta 302  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  114413 ttactttttccaccctatgtctttcctcgcacgcccta 114376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 2539439 - 2539476
Alignment:
Q  265 ttactttttccaccctatgtctttccttgcacgtccta 302  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  2539439 ttactttttccaccctatgtctttcctcgcacgcccta 2539476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 31721916 - 31721945
Alignment:
Q  265 ttactttttccaccctatgtctttccttgc 294  Q
    ||||||||||||||||||||||||||||||    
T  31721916 ttactttttccaccctatgtctttccttgc 31721945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 12523163 - 12523200
Alignment:
Q  265 ttactttttccaccctatgtctttccttgcacgtccta 302  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  12523163 ttactttttccaccctatgtctttcctcgcacgcccta 12523200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 49852849 - 49852816
Alignment:
Q  258 ttgagttttactttttccaccctatgtctttcct 291  Q
    ||||||||||||||| ||||||||||||||||||    
T  49852849 ttgagttttacttttcccaccctatgtctttcct 49852816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University