View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1325_low_5 (Length: 251)
Name: NF1325_low_5
Description: NF1325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1325_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15379535 - 15379294
Alignment:
| Q |
1 |
attttagataagataatttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatg |
100 |
Q |
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| T |
15379535 |
attttagataagataatttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatg |
15379436 |
T |
|
| Q |
101 |
gggttactgatcttagcctccaatccaagacacttagaacaagtagctccattcttctaattgttatgggttcaaacatgtatttgacaccttctaccta |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15379435 |
gggtaactgatcttagcctccaatccaagacacttagaacaagtagctccattcttctaattgttatgggttcaaacatgtatttgacaccttctaccta |
15379336 |
T |
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| Q |
201 |
tattaaattataagaaatttataaagtaatgtcaagtataat |
242 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15379335 |
tattaaattattagaaatttataaagtaatgtcaagtataat |
15379294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 26436366 - 26436517
Alignment:
| Q |
4 |
ttagataagataatttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatgggg |
103 |
Q |
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||||||||||| |||| |||||| |||||||| | || || |||||| ||||||||||| |||||||||||||||||||||||| |||| ||||| |
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| T |
26436366 |
ttagataagatgatttctgtagcacgtgaaattatgaagtgggtgaaagttccagttgaatctagcttgcacgcaaagaaactgaggaaactaagtgggg |
26436465 |
T |
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| Q |
104 |
ttactgatcttagcctccaatccaagacacttagaacaagtagctccattct |
155 |
Q |
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| T |
26436466 |
tgattgatctcagcctccaatccaaaatagtcagaacaagcagctccattct |
26436517 |
T |
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