View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-1 (Length: 405)
Name: NF1326-Insertion-1
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-1 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 5374176 - 5374573
Alignment:
| Q |
8 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374176 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacc |
5374275 |
T |
|
| Q |
108 |
cttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccacactc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374276 |
cttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccacactc |
5374375 |
T |
|
| Q |
208 |
tagatctttaccaccgcccacatgatttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgagtacg |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374376 |
tagatctttaccaccgcccacatgatttcgatttcatgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgagtacg |
5374475 |
T |
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| Q |
308 |
aatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattcatcaagatgggatag |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374476 |
aatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattcatcaagatgggatag |
5374573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 132 - 394
Target Start/End: Original strand, 5368543 - 5368805
Alignment:
| Q |
132 |
aactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccacactctagatctttaccaccgcccacatg |
231 |
Q |
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||||||||| ||||||||| ||||||| | || ||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |||||| || |
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| T |
5368543 |
aactctttcaacagtttcgtggaatcagtgtctcggattttatctcttcgcgatgatttaacttctctccaaactctagatctttaccactgcccacgtg |
5368642 |
T |
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| Q |
232 |
atttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgagtacgaatctgtgtcacttgtaatattca |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5368643 |
atttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacatataatgtccagcgagtacgagtctgtgtcacttgtaatattca |
5368742 |
T |
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| Q |
332 |
acaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattcatca |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5368743 |
acaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattcatca |
5368805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 5355974 - 5356240
Alignment:
| Q |
8 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |
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| T |
5355974 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaacatctctcaacc |
5356073 |
T |
|
| Q |
108 |
cttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccacactc |
207 |
Q |
| |
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|||||||||||||| |||||||| ||||||| ||||||||| |||||||| | || |||||||||||||||||| ||||||||||||||||||||| |
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| T |
5356074 |
cttagattaagttccacagtcttttactcttttgacagtttcatgaaatcagtctctcggattttatctcatcgcgatgatttaacttctctccacactc |
5356173 |
T |
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| Q |
208 |
tagatctttaccaccgcc---cacatgatttcgatttcgtgtgccctgacatactcaaaagcattgt |
271 |
Q |
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|||||||||| |||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
5356174 |
tagatctttataaccgccacacacattatttcgatttcgtggaccctgacatattcaaaagcattgt |
5356240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 391
Target Start/End: Original strand, 5367623 - 5367996
Alignment:
| Q |
9 |
attctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaaccc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
5367623 |
attctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatctaccaaccc |
5367722 |
T |
|
| Q |
109 |
ttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccacactct |
208 |
Q |
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||||||||||||| | | |||||||||||| ||| ||||| ||||| | || ||||| |||| |||||| ||| |||| | ||||||| ||| |
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| T |
5367723 |
ttagattaagttccacgggctttaactcttttgactgtttcatcaaatcgctgactcaaattttgtctcttcgcgatgattcaactgccctccacagtct |
5367822 |
T |
|
| Q |
209 |
agatctttaccaccgcccacatgatttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgagtacga |
308 |
Q |
| |
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|||| ||| |||||||||| ||||| ||| |||| | |||||| ||||||| ||| | || | || ||||||||||||||| | ||||| |
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| T |
5367823 |
agattttt---accgcccaca------ggattttgtggaccctaaaatactcgaaagcatggtaaattacgccatttcacataatgtccagctactacga |
5367913 |
T |
|
| Q |
309 |
atctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
391 |
Q |
| |
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|||| ||||| |||| ||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
5367914 |
atctctgtcagttgtgatattcaacaacttcagtctagcttattttcatctcaaaccttaacgtctcttgacctttctattca |
5367996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 5362406 - 5362780
Alignment:
| Q |
8 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
5362406 |
cattctccatcacattctctccttattggacaccaaagaagcttttcaaacttgcatactctccaaacgatggaagaatctaccaaaccatattccaact |
5362505 |
T |
|
| Q |
108 |
cttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccacactc |
207 |
Q |
| |
|
|||||||||||||| | | |||||||||||| ||| ||||| |||| | || ||||| |||| |||||| ||| |||| | ||||||| || |
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| T |
5362506 |
cttagattaagttccacgggctttaactcttttgactgtttcatcaaattgctgactcaaattttgtctcttcgcgatgattcaactgccctccacagtc |
5362605 |
T |
|
| Q |
208 |
tagatctttaccaccgcccacatgatttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgagtacg |
307 |
Q |
| |
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||||| ||| |||||||||| ||||||||| |||||| |||||| ||||||| ||| | || | || ||||||||||||||| | |||| |
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| T |
5362606 |
tagattttt---accgcccaca------ggatttcgtggaccctgaaatactcgaaagcatggtaaattacgccatttcacataatgtccagctattacg |
5362696 |
T |
|
| Q |
308 |
aatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
391 |
Q |
| |
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||||| ||||| |||| ||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
5362697 |
aatctctgtcagttgtgatattcaacaacttcagtctagcttattttcatctcaaaccttaacgtctcttgacctttccattca |
5362780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 8400273 - 8400208
Alignment:
| Q |
326 |
tattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
391 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||||||| || ||| |||||||| |||| |
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| T |
8400273 |
tattcaacaatttccatctttcttattttcatctcaaactttaacttctcttcacctttctcttca |
8400208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 8400585 - 8400433
Alignment:
| Q |
8 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacc |
107 |
Q |
| |
|
|||| ||||||||||||||||||| || | |||||| ||| ||||||||||| ||||||| || ||||||| ||||| |||| ||| ||||| | |
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| T |
8400585 |
cattatccatcacattctctccttcttgaaaaccaaagaagtttttcaaacttgtgtactctcaacaagatggatccatctcacaaaacatcttccattc |
8400486 |
T |
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| Q |
108 |
cttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagt |
160 |
Q |
| |
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|||| |||| |||| | ||||| ||||| |||||||||| | |||||||| |
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| T |
8400485 |
cttaaattatgttccgaaagctttacctcttccgacagtttcaccaaatcagt |
8400433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 30055021 - 30054957
Alignment:
| Q |
327 |
attcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
391 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
30055021 |
attcaccaacttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattca |
30054957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 30055291 - 30055182
Alignment:
| Q |
8 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacc |
107 |
Q |
| |
|
|||| ||||| |||||||||| || || |||| ||| ||||||||||||||| ||||||||| || |||||||| ||||| |||| ||| |||||||| |
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| T |
30055291 |
cattatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacc |
30055192 |
T |
|
| Q |
108 |
cttagattaa |
117 |
Q |
| |
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|||||||||| |
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| T |
30055191 |
cttagattaa |
30055182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 27701991 - 27701882
Alignment:
| Q |
8 |
cattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacc |
107 |
Q |
| |
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||||||| |||||| ||||||| ||||| |||||||| || |||||||| |||| || ||||| |||||||| |||||| || | | |||||||| |
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| T |
27701991 |
cattctctttcacatactctcctctttagaaaccaaacatgccgttcaaactaccattctttccacaagatggaacaatctctggaaacgtcttccaacc |
27701892 |
T |
|
| Q |
108 |
cttagattaa |
117 |
Q |
| |
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|||||||||| |
|
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| T |
27701891 |
cttagattaa |
27701882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 28928513 - 28928464
Alignment:
| Q |
40 |
ccaaacaagcttttcaaacttccatactctccactagatggaagaatctc |
89 |
Q |
| |
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||||| ||||| ||||||||| ||||||||||||| |||||||||||||| |
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| T |
28928513 |
ccaaagaagctgttcaaacttgcatactctccactcgatggaagaatctc |
28928464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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