View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-10 (Length: 643)
Name: NF1326-Insertion-10
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-10 |
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| [»] scaffold0014 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 475 - 635
Target Start/End: Complemental strand, 51389912 - 51389758
Alignment:
| Q |
475 |
tgagttattgatctcacttttatgtcctcgatcttgaatcgtttcagtgcattcgaagtttacaagcattcaaattcagattggctttgtaagactttga |
574 |
Q |
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| T |
51389912 |
tgagttattgatctcacttttat-------atcttgaatcatttcagtgcattggaaatttactagcattcgaattcggatgggctttgtaagactttga |
51389820 |
T |
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| Q |
575 |
atcatatgt-aaggactttttgtttgtggatatcggtgtatgttatgctgcgctgtgtggtt |
635 |
Q |
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| T |
51389819 |
atcgtttgtgagggactatttctttgtggctatcggtgtatgttatgctgcgttgtgtggtt |
51389758 |
T |
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Target: scaffold0014 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 33164 - 33218
Alignment:
| Q |
429 |
atcactgattgtagtgttcttctaattttgtatgtgttcatatatatgagttatt |
483 |
Q |
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| T |
33164 |
atcactgattgtagtgttcttctaatgttgtatgtgttcatatatatgagttatt |
33218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 33068 - 33115
Alignment:
| Q |
325 |
tttcaattgcctaatatatcatagcctacaattaattaattcctcctc |
372 |
Q |
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| T |
33068 |
tttcaattgcctaatatatcatagcctacaattaattaattcctcctc |
33115 |
T |
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Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 475 - 577
Target Start/End: Original strand, 4351512 - 4351614
Alignment:
| Q |
475 |
tgagttattgatctcacttttatgtcctcgatcttgaatcgtttcagtgcattcgaagtttacaagcattcaaattcagattggctttgtaagactttga |
574 |
Q |
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|||||||||||| ||| |||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||| |||| ||| |||| |
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| T |
4351512 |
tgagttattgatatcatttttatgtcctctttcttgaatcatttcagtgcattggaagtttacaagcattcaatttcggatgggcattgttagatcttga |
4351611 |
T |
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| Q |
575 |
atc |
577 |
Q |
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||| |
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| T |
4351612 |
atc |
4351614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 586 - 643
Target Start/End: Original strand, 770264 - 770321
Alignment:
| Q |
586 |
ggactttttgtttgtggatatcggtgtatgttatgctgcgctgtgtggttagttcatg |
643 |
Q |
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| T |
770264 |
ggactttttgtttgtggatgtcggtgtatgttatgctgcgctgtgtggtttgttcatg |
770321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 475 - 577
Target Start/End: Complemental strand, 15507 - 15405
Alignment:
| Q |
475 |
tgagttattgatctcacttttatgtcctcgatcttgaatcgtttcagtgcattcgaagtttacaagcattcaaattcagattggctttgtaagactttga |
574 |
Q |
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|||||||||||| |||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||| || ||| ||| ||| |||| ||| |||| |
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| T |
15507 |
tgagttattgatatcacttttatgtcctctttcttgaatcatttctgtgcattggaagtttacaagcatttaatttcggatgggcattgttagatcttga |
15408 |
T |
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| Q |
575 |
atc |
577 |
Q |
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||| |
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| T |
15407 |
atc |
15405 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 473 - 550
Target Start/End: Original strand, 29199541 - 29199619
Alignment:
| Q |
473 |
tatgagttattgatctcacttttatgtcctcgatcttgaatcgtttcagtgcattcgaagtttac-aagcattcaaatt |
550 |
Q |
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|||||||||||||| |||||||||||||||| |||| |||| |||||||| ||| ||||||||| ||||||||||||| |
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| T |
29199541 |
tatgagttattgatatcacttttatgtcctctttcttaaatcatttcagtgtattggaagtttacaaagcattcaaatt |
29199619 |
T |
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