View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-12 (Length: 414)
Name: NF1326-Insertion-12
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 45207926 - 45208333
Alignment:
| Q |
8 |
gttggttcttaaatacttatctccttgcccattcctggaaggctgcagctaattttacaaacaagaaaaatagcccagtgattgaacaaattttaaaatc |
107 |
Q |
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| T |
45207926 |
gttggttcttaaatacttatctccttgcccattcctggaaggctgcagctaattttacaaacaagaaaaatagcccagtgattgaacaaatttaaaaatc |
45208025 |
T |
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| Q |
108 |
ctcaaattccataattaccgatgaacctcttcttcaaaatattgggttacttatagataatatacctttcgttctattgtgatgtcaccaaaaatattta |
207 |
Q |
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| T |
45208026 |
ctcaaattccataattaccgatgaacctcttcttcaaaatattgggttacttatagataatatacctttctttctattgtgaagtcaccaaaaatattta |
45208125 |
T |
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| Q |
208 |
accatttattctatataccataataagaggaattggtgtgccaaagtggaagatatcgacttgttgggatctccagtcacgattgaggttattcgattgt |
307 |
Q |
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| T |
45208126 |
accatttattctatataccataataagaggaattggtgtggcaaagcggaagatatcgacttgttgggatctccagtcacgactgagattattcgattgt |
45208225 |
T |
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| Q |
308 |
gtaaaattgattttaaaatcaatgacggagattgactacaacgttaaactgcgtg-tttcttacaataaagaatccggatctgaatattaatgggtttct |
406 |
Q |
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| T |
45208226 |
gcaaaattgattttaaaatcaatgacggagattgactacaacattaaactgcgtgtttttttacaataaagaatccggatctgaatattaatgggtttct |
45208325 |
T |
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| Q |
407 |
tgatgata |
414 |
Q |
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| T |
45208326 |
tgatgata |
45208333 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 7686677 - 7686725
Alignment:
| Q |
19 |
aatacttatctccttgcccattcctggaaggctgcagctaattttacaa |
67 |
Q |
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| T |
7686677 |
aatacttatctccttgaccgtttctggaaggctgaagcaaattttacaa |
7686725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 7738593 - 7738545
Alignment:
| Q |
19 |
aatacttatctccttgcccattcctggaaggctgcagctaattttacaa |
67 |
Q |
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| T |
7738593 |
aatacttatctccttgaccgtttctggaaggctgaagcaaattttacaa |
7738545 |
T |
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