View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-13 (Length: 672)
Name: NF1326-Insertion-13
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 39 - 550
Target Start/End: Original strand, 5428887 - 5429396
Alignment:
| Q |
39 |
aaaacaagactttatattccaccaccnnnnnnnntcagactttatacttaaagtcttaaatatttaattaaatgctttagcagaatacacatgtgtgtaa |
138 |
Q |
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| T |
5428887 |
aaaacaagactttatattccaccaccaaaaaaa-tcagactttatacttaaagtcttaaatatttaattaaatgctttagcagaatacacatgtgtgtaa |
5428985 |
T |
|
| Q |
139 |
ggtacatattttgacttcgtcttccatcattcattatttttcatctgctagttacttggaagcaagcacaagaatatgaccatgacgatcaaagcaaaga |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5428986 |
ggtacatattttgacttcgtcttccatcattcattatttttcatctgctagttacttggaagcaagcacaagaatatgaccatgacgatcaaagcaaaga |
5429085 |
T |
|
| Q |
239 |
aaccatatgtcattacaaccttatatttaatgctacatagccgtctgaaaatgactcttattattattactacactttgtccnnnnnnnnctttctatac |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5429086 |
aaccatatgtcattacaaccttatatttaatgctacatagccgtctgaaaatgactcttattattattactacactttgtccttttttttctttctatac |
5429185 |
T |
|
| Q |
339 |
tcttcttgtacatattatcatcataaaaaatattcaaccttatgtttcacccttgtgcttcaagacttcaaagtcaataacaagcttc-agaacaagaga |
437 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
5429186 |
tcttcttgtacatattatcatcataaaaaatattcaaccttatgtttcacccttgtgcttcaagacttcaaagtcaataacaagtttcaagaacaagaga |
5429285 |
T |
|
| Q |
438 |
agnnnnnnncaagaagaagaaagtggagtgnnnnnnnnncttcttctttgatatttcaaagttcaactatgtttggtcttggatgaaagaaagtgtctga |
537 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5429286 |
agaaaaaaataagaagaagaaagtggagtg--tttttttcttcttctttgatatttcaaagttcaactatgcttggtcttggatgaaagaaagtgtctga |
5429383 |
T |
|
| Q |
538 |
aaatttcctagct |
550 |
Q |
| |
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||||||| ||||| |
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| T |
5429384 |
aaatttcttagct |
5429396 |
T |
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