View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1326-Insertion-14 (Length: 548)
Name: NF1326-Insertion-14
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-14 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 202 - 548
Target Start/End: Original strand, 43961272 - 43961618
Alignment:
| Q |
202 |
aatggatataatgttagataggaagtgaagaaatccaccgttcaaccaaatgttggtgaagagtctccaggcttgacgacggtggacaatgttatgccat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43961272 |
aatggatataatgttagataggaagtgaagaagtccaccgttcaaccaaatgttggtgaagagtctccaggcttgacgacggtggacagtgttatgccat |
43961371 |
T |
|
| Q |
302 |
ctaagaactctcatattggttaatcttccaaaaaataatcacaaaaacaaacttggacggtaatggttccctctcttttttcaactccccctttctcatt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43961372 |
ctaagaactctcatattggttaatcttccaaaaaataatcacaaaaacaaacttggacagtaatggttccctctcttttttcaactccccctttctcatt |
43961471 |
T |
|
| Q |
402 |
gtagtgattgtcactcttcatcttttatcttgcatattgtatctcagcaaaatcccaataagaaaccggtcgcagagccacaaccaatctagtggattca |
501 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
43961472 |
gtactgattgtcactcttcatcttttatcttgcatattgtatctcagcaaaattccaataagaaaccggtggcggagccacaaccaatctagtggattca |
43961571 |
T |
|
| Q |
502 |
agtgaatccccttgaactttattcttgaccaattttttatgtgtttt |
548 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43961572 |
agtgaatccccttgaattttattcttgaccaattttttatgtgtttt |
43961618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 43959487 - 43959547
Alignment:
| Q |
8 |
atgtgtttagttttctatatttatttgtgcatttatgtgtgtaaaaactttatttgtgttt |
68 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43959487 |
atgtgtttagttttctatatttatttgtacatttatgtgtgtaaaaactttatttgtgttt |
43959547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 43960271 - 43960331
Alignment:
| Q |
150 |
gaaaaagaacttgccaaatccgaattggcgttcgaggcaaatgccggaggataatggatat |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43960271 |
gaaaaagaacttgccaaattcgaattggcgttcgaggcaaatgcgagaggataatggatat |
43960331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 43960172 - 43960222
Alignment:
| Q |
84 |
catgcttgtgatatattttattttaattc-aatctttttcgtttttaaaat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
43960172 |
catgcttgtgatatattttattttaattcaaatctttttcctttttaaaat |
43960222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University