View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-15 (Length: 692)
Name: NF1326-Insertion-15
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-15 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 7 - 657
Target Start/End: Original strand, 8449934 - 8450600
Alignment:
| Q |
7 |
aactaatgttctgtttttcaccatcataaaaacaaaatgaaatataatattttgagagcagtgtacatatag-----atggcagaattggannnnnnnnn |
101 |
Q |
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| T |
8449934 |
aactaatgttgtgtttttcaccatcataaaaacaaagtgaaatataatattttgagagcagtgtacatatagtatagatggcagaattggattttttttt |
8450033 |
T |
|
| Q |
102 |
nctctatataaactctacattaaagggtaaaaatgacatttattttaaaacaaataattataatgactctttccgagtaagttatcaatttagtctttaa |
201 |
Q |
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| T |
8450034 |
tctctatataaactctacattaaaaagtaaaaatgacatttattttaaaacaaataattataataactctttccgaataagtcatcaatttagtctttaa |
8450133 |
T |
|
| Q |
202 |
atcacccaccgctctcgtcaatttagtctctaaagtgtgtaaatataataagaaatccctgaagtatataaaatttgttactttaatccatgttattaag |
301 |
Q |
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| T |
8450134 |
atcacccaccgctttcgtcaatttagtctctaaagtgtgtaaatataataagtaatccctgaagtatataaaatttgttactttaatccatgttattaag |
8450233 |
T |
|
| Q |
302 |
gtgttagagac--aataatttagagatttttatacccgttcataactaaattgacttatttc-----atatagtttatgaagtatatttactattattta |
394 |
Q |
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| T |
8450234 |
gtgttagagacaaaataatttagagatttttgtacccgttcagaactaaattgacttatttcatataatatagtttatgaagtatatttactattattta |
8450333 |
T |
|
| Q |
395 |
catttattaaatatatgtcacgaaatatgttaataacaaagaaaataattacccaatactccgaaattagatgaagcgaagtgggtaaaaagtgaataac |
494 |
Q |
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| T |
8450334 |
catttattaaatatatgtcacgaaatatgttaataacaaagaaaataattacccaatactccg-aattagacgaagcgaagtgggtaaaaagtgaataac |
8450432 |
T |
|
| Q |
495 |
atgccactttgtacgggcgcgaaaaacaaccatacttccattttttaaaccacctctcttggtaaagttctataaagctaatcattgtttttaa-gtttc |
593 |
Q |
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| T |
8450433 |
atgccactttgtac-ggcgcgaaaaacaaccatacttccattttttaaaccacctctcttggtaaagttctataaagctaatcattgtttttaaggtttc |
8450531 |
T |
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| Q |
594 |
ttcgatttyc-tttaccctcccatggttt--aaggtgga-tcatttgcat-tatccatcccgctcaaat |
657 |
Q |
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| T |
8450532 |
ttcggttttcttttaccctcccatggttttaaagatggattcatttgcatgtattcatcccgctcaaat |
8450600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 222 - 452
Target Start/End: Original strand, 8242913 - 8243146
Alignment:
| Q |
222 |
atttagtctctaaagtgtgtaaatataataagaaatccctgaagtatataaaatttgttactttaatccatgttattaaggtgttagagac--aataatt |
319 |
Q |
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| T |
8242913 |
atttagtctctaaagtgtccaaatataataattagtccttaaagtatataaaatttgtcactttagtccatgtaatttcggtgttagagactaaataatt |
8243012 |
T |
|
| Q |
320 |
tagagatttttat-acccgttcataactaaattgacttatttcatatagtttatgaagtatatttactattatttacatttattaaatatatgtcacgaa |
418 |
Q |
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| T |
8243013 |
tacggtttttttttataatttaagagctaaattgacacatttcatatactttatagactatatttactattattcacatttataaaatataagtcacgaa |
8243112 |
T |
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| Q |
419 |
atatgttaataacaaagaaaataattacccaata |
452 |
Q |
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| T |
8243113 |
atacattgataacaaagaaaataattacacaata |
8243146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 8233611 - 8233727
Alignment:
| Q |
128 |
gtaaaaatgacatttattttaaaacaaataattataatgactctttccgagtaagttatcaatttagtctttaaatcacccaccgctctcgtcaatttag |
227 |
Q |
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| T |
8233611 |
gtaaaaatgacatttattttgaaacaaataattacaataactctttttaaataaactatcaatttaatctttaaa----ataccactctcttcaatttaa |
8233706 |
T |
|
| Q |
228 |
tctctaaagtgtgtaaatata |
248 |
Q |
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| T |
8233707 |
tctctaaagtgtgtaaatata |
8233727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 8248182 - 8248244
Alignment:
| Q |
382 |
ttactattatttacatttattaaatatatgtcacgaaatatgttaataacaaagaaaataatt |
444 |
Q |
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| T |
8248182 |
ttactattattcacattcataaaatatatgtcacgaaatacactaataacaacgaaaagaatt |
8248244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 37641066 - 37641123
Alignment:
| Q |
241 |
taaatataataagaaatccctgaagtatataaaatttgttactttaatccatgttatt |
298 |
Q |
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| T |
37641066 |
taaatataataagtattccctgaagtatataaaatttgtcaatttagtccctgttatt |
37641123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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