View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326-Insertion-17 (Length: 482)

Name: NF1326-Insertion-17
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326-Insertion-17
NF1326-Insertion-17
[»] chr2 (1 HSPs)
chr2 (8-482)||(17925012-17925486)
[»] chr6 (5 HSPs)
chr6 (13-468)||(12956212-12956667)
chr6 (13-471)||(12905320-12905779)
chr6 (13-482)||(12897699-12898168)
chr6 (16-468)||(12946778-12947230)
chr6 (13-468)||(12930410-12930865)
[»] chr5 (15 HSPs)
chr5 (196-309)||(10764876-10764989)
chr5 (49-156)||(10742634-10742741)
chr5 (347-459)||(10610178-10610290)
chr5 (377-465)||(10764755-10764843)
chr5 (49-164)||(11049796-11049911)
chr5 (49-307)||(10609880-10610138)
chr5 (112-158)||(10718828-10718874)
chr5 (355-456)||(10742334-10742435)
chr5 (49-305)||(10748798-10749054)
chr5 (402-456)||(10563550-10563604)
chr5 (183-219)||(10549097-10549133)
chr5 (124-236)||(10557165-10557277)
chr5 (111-162)||(10563259-10563310)
chr5 (399-453)||(7191525-7191579)
chr5 (403-453)||(10653837-10653887)
[»] chr8 (1 HSPs)
chr8 (112-157)||(27725990-27726035)


Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 17925486 - 17925012
Alignment:
Q  8 gttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925486 gttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgc 17925387  T
Q  108 gcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattcca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925386 gcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattcca 17925287  T
Q  208 caagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcactta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925286 caagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcactta 17925187  T
Q  308 tttcccttgcggtggaacaaaataactttctcggctcttttccacccaacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925186 tttcccttgcggtggaacaaaataactttctcggctcttttccacccaacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatca 17925087  T
Q  408 attctcaggtccaatccctttttcgattgcaaacgcttctgccctacaaatattagacttatcaggagacatgaa 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  17925086 attctcaggtccaatccctttttcgattgcaaacgcttctgccctacaaatattagacttatcagaaaacatgaa 17925012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Original strand, 12956212 - 12956667
Alignment:
Q  13 aatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcata 112  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||   |||||||||  |   |    
T  12956212 aatctcaaattattgtttttgaatgggaaccatctcaatggtaaaataccaactgaaatcggctctttgaaaaagcttcaaagaatgactgtttggagaa 12956311  T
Q  113 acaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaaga 212  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  12956312 acaagttaactggtggaatcccttcattcataggaaatctttcaagcttaacacgtctatcagcttctcgtaacaattttgagggagatattccacaaga 12956411  T
Q  213 aatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcacttatttcc 312  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||    
T  12956412 aatatgttgctgcaaacacttgacatttttagctttgggtgagaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgcc 12956511  T
Q  313 cttgcggtggaacaaaataactttctcggctcttttccacccaacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatcaattct 412  Q
    ||||||||   |||||||||| |||  |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  12956512 cttgcggtaacacaaaataaccttcatggctcttttccacccaacatgttccacaccctccccaatcttcaaatattcgattttgcagcaaatcaattct 12956611  T
Q  413 caggtccaatccctttttcgattgcaaacgcttctgccctacaaatattagactta 468  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  12956612 caggtccaatccctatttcgattgcaaatgcttctgccctacaaatattagactta 12956667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 471
Target Start/End: Original strand, 12905320 - 12905779
Alignment:
Q  13 aatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcata 112  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||  |   |    
T  12905320 aatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaagcttcaaacaatgagtgtttggagaa 12905419  T
Q  113 acaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaaga 212  Q
    |||| ||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||| | ||  ||||||||||||||||||||||||||||||    
T  12905420 acaagttaaccggtggaatcccttcattcataggaaatatttcaagcttaacacgtctatcagtttctggtaacaattttgagggagatattccacaaga 12905519  T
Q  213 aatatgttgccgcaaacacttgacatttttagctttgggtgagaa-caatttttccggtaagattccatcttgtctttataacatctcatcacttatttc 311  Q
    |||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||| ||||||||||||||| |    
T  12905520 aatatgtttcctcaaacacttgacatttttagctttgggtgagaaacaatttgtccggtaagataccttcttgtctttataatatctcatcacttattac 12905619  T
Q  312 ccttgcggtggaacaaaataactttctcggctcttttccacccaacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatcaattc 411  Q
    ||||||||||||| |||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||  ||||||||||    
T  12905620 ccttgcggtggaagaaaataacttgcatggctcttttccacccaacatgttccacaccctccccaatcttaaattattacattttgcatcaaatcaattc 12905719  T
Q  412 tcaggtccaatccctttttcgattgcaaacgcttctgccctacaaatattagacttatca 471  Q
    || |||||||||||| |||||||||  || ||||||||||||||||||||||||||||||    
T  12905720 tctggtccaatccctatttcgattgataatgcttctgccctacaaatattagacttatca 12905779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 482
Target Start/End: Original strand, 12897699 - 12898168
Alignment:
Q  13 aatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcata 112  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||  ||||  | |||    
T  12897699 aatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaattcggctctttgaaaaagcttcaatcaatgtttgttcggaata 12897798  T
Q  113 acaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaaga 212  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||| | ||   |||||||||||||||||||||||||||||    
T  12897799 acaatttaaccggaggaatcccttcattcattggaaatctttcaagcttaacacgtctgtcagtttctgaaaacaattttgagggagatattccacaaga 12897898  T
Q  213 aatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcacttatttcc 312  Q
    |||||||| || |||||||||||||| ||||| |||| |||  |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |     
T  12897899 aatatgtttcctcaaacacttgacatatttaggtttgagtgtcaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattaca 12897998  T
Q  313 cttgcggtggaacaaaataactttctcggctcttttccacccaacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatcaattct 412  Q
    ||| |||    |||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||| | ||  |||||| ||||||||||||||    
T  12897999 ctttcggcaacacaaaataacttgcatggctcttttccacccaacatgttccacaccctccccaatcttaaatttttacattttggaggaaatcaattct 12898098  T
Q  413 caggtccaatccctttttcgattgcaaacgcttctgccctacaaatattagacttatcaggagacatgaa 482  Q
    | |||||||| ||| |||||||||| || |||||| |||||||||||||||||||||||| | |||||||    
T  12898099 ctggtccaattcctatttcgattgctaatgcttctaccctacaaatattagacttatcagaaaacatgaa 12898168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 468
Target Start/End: Original strand, 12946778 - 12947230
Alignment:
Q  16 ctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataaca 115  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||| |||||||||||| | ||||    
T  12946778 ctcaaatttttgtttttgagtgggaaccatctcatcggtaaaataccaactgaaatcggctctttgaagaaggttcaagcaatgactgttgcgaaaaaca 12946877  T
Q  116 atttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaagaaat 215  Q
    ||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||| || | ||   ||||||||||||||||| ||||||||||||||    
T  12946878 atttaatcggaggaatcccttcattcattggaaatctttcaagcttaacacgtctattagtttctgaaaacaattttgagggagacattccacaagaaat 12946977  T
Q  216 atgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcacttatttccctt 315  Q
    |||||  | |||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||  ||||    
T  12946978 atgttttctcaaacacttgacatttttagctttgaatgagaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgtcctt 12947077  T
Q  316 gcggtggaacaaaataactttctcggctcttttccacccaacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatcaattctcag 415  Q
     ||||   ||  ||| || |||  ||||||||| |||||||||| ||||||||||||||||||||| || ||||  |||||| || ||||||||||||||    
T  12947078 tcggtaacactgaatcaccttcatggctcttttgcacccaacatgttccacaccctccccaatcttgaactattctattttggagcaaatcaattctcag 12947177  T
Q  416 gtccaatccctttttcgattgcaaacgcttctgccctacaaatattagactta 468  Q
    ||||||| ||| |||| |||||||| |||||||||||||||| ||||||||||    
T  12947178 gtccaattcctatttcaattgcaaatgcttctgccctacaaagattagactta 12947230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 468
Target Start/End: Original strand, 12930410 - 12930865
Alignment:
Q  13 aatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcata 112  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||| ||  |||||| | |||    
T  12930410 aatctcaaattattgtatttgaatgggaaccatctcaatggtaaaataccaattgaaattggctctttgaaaaagcttcaagcaatatctgttgggaata 12930509  T
Q  113 acaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaaga 212  Q
    || ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||      | |   ||||||||    ||  | |||||||||||    
T  12930510 accatttaaccgaaggaatcccttcatttataggaaatctttcatgcttaacacgtctaaatttgggtgagaacaatttctccggtaagattccacaaga 12930609  T
Q  213 aatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcacttatttcc 312  Q
    |||||||| || ||||||||||||| |||||| | || ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  12930610 aatatgtttcctcaaacacttgacaattttaggtgtgagtgagaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttatttcc 12930709  T
Q  313 cttgcggtggaacaaaataactttctcggctcttttccacccaacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatcaattct 412  Q
    ||| ||||   ||| ||| || |||  |||||||||||||||||||| |||||||||||||||||| || ||||||| | |||||||| |||||||||||    
T  12930710 cttacggtaacacagaatcaccttcatggctcttttccacccaacatgttccacaccctccccaatattcaaatattcgcttttgcagcaaatcaattct 12930809  T
Q  413 caggtccaatccctttttcgattgcaaacgcttctgccctacaaatattagactta 468  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  12930810 caggtccaatccctacttcgattgcaaatgcttctgccctacaaatattagactta 12930865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 10764989 - 10764876
Alignment:
Q  196 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataaca 295  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||||| |||| || ||||||||||| || |||||||||||||||||||||||||| |    
T  10764989 ggagatattccacaagaaatatgtcgcctcaaaaacttgacatttttatcttttggcgagaacaatttgtctggtaagattccatcttgtctttataata 10764890  T
Q  296 tctcatcacttatt 309  Q
    ||||||||||||||    
T  10764889 tctcatcacttatt 10764876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 10742741 - 10742634
Alignment:
Q  49 attggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaa 148  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||| |  ||| ||||  | ||||||||||||||||||||||| |||||| |||||| |    
T  10742741 attggcaaaataccaattgaaattggctatttgaaaaaacttcaatcattgagtgtttggaataacaatttaactggaggaatctcttcatccataggga 10742642  T
Q  149 atctttca 156  Q
    ||||||||    
T  10742641 atctttca 10742634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 347 - 459
Target Start/End: Original strand, 10610178 - 10610290
Alignment:
Q  347 ttccacccaacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatcaattctcaggtccaatccctttttcgattgcaaacgcttc 446  Q
    ||||||||||||| ||  |||||||||| ||||| |||   |||||   || |||||||||||||||||||||||||||| |||| |||||||| |||||    
T  10610178 ttccacccaacatgttttacaccctccctaatctcaaatcttttgaacctggaggaaatcaattctcaggtccaatccctgtttccattgcaaatgcttc 10610277  T
Q  447 tgccctacaaata 459  Q
    | |||||||||||    
T  10610278 ttccctacaaata 10610290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 377 - 465
Target Start/End: Complemental strand, 10764843 - 10764755
Alignment:
Q  377 atcttaaaatatttgattttgcaggaaatcaattctcaggtccaatccctttttcgattgcaaacgcttctgccctacaaatattagac 465  Q
    |||||||||||||  |||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||| | ||||| || |||||    
T  10764843 atcttaaaatattaaattttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcttctgtcatacaattactagac 10764755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 11049911 - 11049796
Alignment:
Q  49 attggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaa 148  Q
    ||||| || ||||||| |||||| ||||||||||||||||||||| |  || |  ||  | | || || ||||||||||||||||||||||||||||| |    
T  11049911 attggcaagataccaaatgaaattggctctttgaaaaaacttcaatcattggccatttggaaaaataaattaactggaggaatcccttcattcataggga 11049812  T
Q  149 atctttcatgcttaac 164  Q
    |||||||| |||||||    
T  11049811 atctttcaagcttaac 11049796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 307
Target Start/End: Original strand, 10609880 - 10610138
Alignment:
Q  49 attggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaa 148  Q
    ||||| |||||||| | |||||| |||||||||||||| ||||||    ||||  ||  | | ||||| ||||| |||||||| ||||||||| |||| |    
T  10609880 attggcaaaataccgattgaaattggctctttgaaaaagcttcaatatgtgaccatttggaaaaacaaattaaccggaggaattccttcattcgtaggga 10609979  T
Q  149 atctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaagaaatatgttgccgcaaacacttgacatttttagcttt 248  Q
    |||||||||||||||| ||| | |||| | ||   ||||| || || || |||||||||||||||| |||| | | |||| | |||| |  ||||  | |    
T  10609980 atctttcatgcttaacgcgtttttcagttacttcaaacaacttagaaggggatattccacaagaaacatgtcgtctcaaaaatttgagaggtttatttat 10610079  T
Q  249 gggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcactta 307  Q
    |||||  ||| |||| || |||| |||||| ||||||||||| || |||||| ||||||    
T  10610080 gggtgtaaactatttgtctggtatgattccttcttgtctttacaatatctcagcactta 10610138  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 10718874 - 10718828
Alignment:
Q  112 aacaatttaactggaggaatcccttcattcataggaaatctttcatg 158  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  10718874 aacaatttaactggaggaatcccttcattcatgggaaatctttcatg 10718828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 456
Target Start/End: Complemental strand, 10742435 - 10742334
Alignment:
Q  355 aacatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatcaattctcaggtccaatccctttttcgattgcaaacgcttctgccctac 454  Q
    ||||| ||||||| ||| |||||||| |  || ||||| |||| || |||||||||| |||||||||||||| |||| |||||||| ||||||||| |||    
T  10742435 aacatgttccacaacctacccaatctaattatttttgaatttggagtaaatcaattcacaggtccaatccctatttccattgcaaatgcttctgccttac 10742336  T
Q  455 aa 456  Q
    ||    
T  10742335 aa 10742334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 305
Target Start/End: Complemental strand, 10749054 - 10748798
Alignment:
Q  49 attggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaa 148  Q
    ||||| |||||||||| |||||| |||||||||||||| ||||||   || | ||||  |   |||||||||||||| ||| | |||||||||||||| |    
T  10749054 attggcaaaataccaattgaaattggctctttgaaaaagcttcaactaataaatgtttggggaaacaatttaactggtggatttccttcattcataggga 10748955  T
Q  149 atctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaagaaatatgttgccgcaaacacttgacatttttagcttt 248  Q
    ||||||||| ||||| | |  |  | | | |   |||||| ||  ||||||| ||||||||||||||||||   | |||| || | | |   |||  | |    
T  10748954 atctttcatccttaatagggattgcggttacatataacaacttaaagggagagattccacaagaaatatgtaatctcaaaaacattagaaggttacatgt 10748855  T
Q  249 gggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcact 305  Q
    ||||||||||||||| || |||| | |||| |||||||||||||| |||||||||||    
T  10748854 gggtgagaacaatttgtctggtatgtttccttcttgtctttataatatctcatcact 10748798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 10563550 - 10563604
Alignment:
Q  402 aaatcaattctcaggtccaatccctttttcgattgcaaacgcttctgccctacaa 456  Q
    ||||||||||||||||||||||||| |||| |||| ||| |||||| ||||||||    
T  10563550 aaatcaattctcaggtccaatccctatttccattgtaaatgcttcttccctacaa 10563604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 10549097 - 10549133
Alignment:
Q  183 taacaattttgagggagatattccacaagaaatatgt 219  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10549097 taacaatttggagggagatattccacaagaaatatgt 10549133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 10557165 - 10557277
Alignment:
Q  124 ggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaagaaatatgttgcc 223  Q
    |||||| ||||  |||||||||| |||||||||  |||||||  ||| ||   | ||| |||||| || |||||||||||||| |||||||||||| |||    
T  10557165 ggaggagtcccaccattcataggtaatctttcagtcttaacaactctttccatttctcgtaacaacttagagggagatattccccaagaaatatgtcgcc 10557264  T
Q  224 gcaaacacttgac 236  Q
      |||||||||||    
T  10557265 taaaacacttgac 10557277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 10563259 - 10563310
Alignment:
Q  111 taacaatttaactggaggaatcccttcattcataggaaatctttcatgctta 162  Q
    |||||||||||||||||| |||||||||| |||||| || ||||||| ||||    
T  10563259 taacaatttaactggagggatcccttcatccatagggaacctttcatcctta 10563310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 7191525 - 7191579
Alignment:
Q  399 aggaaatcaattctcaggtccaatccctttttcgattgcaaacgcttctgcccta 453  Q
    ||||||||||||||||||| |||||||| |||| ||| |||| |||||| |||||    
T  7191525 aggaaatcaattctcaggtacaatccctatttccatttcaaatgcttcttcccta 7191579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 10653887 - 10653837
Alignment:
Q  403 aatcaattctcaggtccaatccctttttcgattgcaaacgcttctgcccta 453  Q
    ||||||||||||||| |||||||| |||| |||||||| |||||| |||||    
T  10653887 aatcaattctcaggtacaatccctatttccattgcaaatgcttcttcccta 10653837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 27726035 - 27725990
Alignment:
Q  112 aacaatttaactggaggaatcccttcattcataggaaatctttcat 157  Q
    |||||||| || |||| |||||||||||| ||||||||||||||||    
T  27726035 aacaatttgacaggagaaatcccttcatttataggaaatctttcat 27725990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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