View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326-Insertion-2 (Length: 782)

Name: NF1326-Insertion-2
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326-Insertion-2
NF1326-Insertion-2
[»] chr7 (8 HSPs)
chr7 (247-687)||(38707123-38707577)
chr7 (5-185)||(38706841-38707021)
chr7 (444-626)||(10045499-10045684)
chr7 (393-436)||(3835738-3835782)
chr7 (393-435)||(14771484-14771527)
chr7 (393-435)||(15221936-15221979)
chr7 (393-435)||(15643304-15643347)
chr7 (393-435)||(2271957-2271999)
[»] chr4 (3 HSPs)
chr4 (522-627)||(45467431-45467538)
chr4 (393-435)||(19443644-19443687)
chr4 (393-435)||(45666270-45666313)
[»] chr8 (1 HSPs)
chr8 (393-433)||(3741581-3741621)
[»] chr1 (3 HSPs)
chr1 (393-433)||(36320046-36320086)
chr1 (394-435)||(23699529-23699571)
chr1 (393-433)||(1674845-1674886)
[»] chr3 (7 HSPs)
chr3 (392-435)||(19578300-19578344)
chr3 (393-435)||(5493522-5493565)
chr3 (393-435)||(45646569-45646612)
chr3 (394-431)||(25342455-25342493)
chr3 (393-435)||(37031040-37031082)
chr3 (393-433)||(20841290-20841331)
chr3 (395-435)||(44940966-44941007)
[»] chr5 (2 HSPs)
chr5 (393-435)||(36060264-36060307)
chr5 (398-435)||(19803634-19803672)
[»] scaffold0118 (1 HSPs)
scaffold0118 (393-433)||(14890-14931)
[»] chr6 (1 HSPs)
chr6 (393-433)||(26252695-26252736)
[»] chr2 (3 HSPs)
chr2 (395-435)||(25965949-25965990)
chr2 (393-433)||(27746438-27746479)
chr2 (558-595)||(42450371-42450408)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 247 - 687
Target Start/End: Original strand, 38707123 - 38707577
Alignment:
Q  247 ctgtttcttttctcttgttggcaaagctgctaagctgttagggtaaattccttttatagagtaacggtttggctaacttcgtgctcttttatttattact 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38707123 ctgtttcttttctcttgttggcaaagctgctaagctgttagggtaaattccttttatagagtaacggtttggctaactttgtgctcttttatttattact 38707222  T
Q  347 cctccgttccttttcaa--------------gaatttttcgttccttatttaactgtagttgtcgttttggtattttaaggtacgatttgtcaattatac 432  Q
    |||||||||||||||||              ||||||||||||||| |||||||| |      ||||||||||||||||| ||||||||||| |||||||    
T  38707223 cctccgttccttttcaactgttttttagggtgaatttttcgttcct-atttaactat------cgttttggtattttaagctacgatttgtcgattatac 38707315  T
Q  433 cctcgtatgcactgccttcttaacatctattattctcctttattttaattattgatgcattgtaggtgcgaaaagaacttgaaaatttaagagacaaact 532  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  38707316 cctcgtatgcactgccttcgtaacatctattattctcctttattttaattattgatgcattgtaggtgcaaaaagaacttgaaaatttaagagacaagct 38707415  T
Q  533 tcaacatctgaagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaaacatacgtgaagagctcctctttgcactacag--agc 630  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||    
T  38707416 tcgacatctgaagatgcagtataacaaagagaaagagaggattgatgagatttgaaggctgaaacatacgtgaagagctcctctttgcactacaggaggc 38707515  T
Q  631 tgaga-gtggtatgatcttgaaa--gtggaaaatgcaat-aaaaatc-tgaaggtagcactg 687  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||    
T  38707516 tgagaggtggtatgatcttgaaaaggtggaaaatgcaataaaaaatcttgaaggtagcactg 38707577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 38706841 - 38707021
Alignment:
Q  5 acaaaaacacccaacttaaagactcc----aaaccttagcccaccctaagagaacccaaataatccacaacaattccctcctatcagtaaggaccaacag 100  Q
    ||||||||||||||||||||||||||    |||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||    
T  38706841 acaaaaacacccaacttaaagactccgaccaaaccttagcccaccctaagggaacccaaat---ccacaacaattccctcctatcagtaaggaccaacag 38706937  T
Q  101 ccgctgagaccacaaagagatcaacccctaaaccatgatctatctaccagtattattctaatgaaaacggaactatcaagcttgt 185  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  38706938 ccgctgagaccacaaagagatcaa-ccctaaaccatgatctatctaccagtattattctaatgaaaatggagctatcaagcttgt 38707021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 444 - 626
Target Start/End: Original strand, 10045499 - 10045684
Alignment:
Q  444 ctgccttcttaacatctattattctcctttattttaattattgatg-cattgtaggtgcgaaaagaacttgaaaatttaagagacaaacttcaacatctg 542  Q
    |||||||| ||||||| |||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||| |||||||||||||| ||||| | ||||    
T  10045499 ctgccttcgtaacatccattattctcctttattctaattattgatgtcattgcaggtgcggaaagaacttgacaatttaagagacaagcttcagcctctg 10045598  T
Q  543 aagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaaac--atacgtgaagagctcctctttgcactaca 626  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||||||||||||||    
T  10045599 aagatgaagtatatcaaagagaaagagaggattgatgagattcgaagtctgaaacagaaacgtgaagagctcctctttgcactaca 10045684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 3835782 - 3835738
Alignment:
Q  393 tgtcgttttggtattttaagg-tacgatttgtcaattataccctc 436  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  3835782 tgtctttttggtattttaagggtacgatttgtcaattataccctc 3835738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 14771527 - 14771484
Alignment:
Q  393 tgtcgttttggtattttaa-ggtacgatttgtcaattataccct 435  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  14771527 tgtcgttttggtattttaagggtatgatttgtcaattataccct 14771484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 15221979 - 15221936
Alignment:
Q  393 tgtcgttttggtattttaa-ggtacgatttgtcaattataccct 435  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  15221979 tgtcgttttggtattttaagggtatgatttgtcaattataccct 15221936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 15643304 - 15643347
Alignment:
Q  393 tgtcgttttggtattttaa-ggtacgatttgtcaattataccct 435  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  15643304 tgtcgttttggtattttaagggtacgatttctcaattataccct 15643347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 2271999 - 2271957
Alignment:
Q  393 tgtcgttttggtattttaaggtacgatttgtcaattataccct 435  Q
    |||| ||||||||||||  ||||||||||||||||||||||||    
T  2271999 tgtcattttggtatttttgggtacgatttgtcaattataccct 2271957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 522 - 627
Target Start/End: Original strand, 45467431 - 45467538
Alignment:
Q  522 agagacaaacttcaacatctgaagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaa--acatacgtgaagagctcctctttg 619  Q
    |||||||| ||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||||||    
T  45467431 agagacaagcttcaacctctgaagatgaagtatagtaaagagaaagagaggattgatgagattcgaaggctgaagcagaaacgtgaagagctcctctttg 45467530  T
Q  620 cactacag 627  Q
    ||||||||    
T  45467531 cactacag 45467538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 19443687 - 19443644
Alignment:
Q  393 tgtcgttttggtattttaagg-tacgatttgtcaattataccct 435  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  19443687 tgtctttttggtattttaaggatacgatttgtcaattataccct 19443644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 45666270 - 45666313
Alignment:
Q  393 tgtcgttttggtattttaa-ggtacgatttgtcaattataccct 435  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  45666270 tgtctttttggtattttaaaggtacgatttgtcaattataccct 45666313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 3741581 - 3741621
Alignment:
Q  393 tgtcgttttggtattttaaggtacgatttgtcaattatacc 433  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  3741581 tgtcgttttggtattttaaagtacgatttgtcaattatacc 3741621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 36320086 - 36320046
Alignment:
Q  393 tgtcgttttggtattttaaggtacgatttgtcaattatacc 433  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  36320086 tgtctttttggtattttaaggtacgatttgtcaattatacc 36320046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 23699571 - 23699529
Alignment:
Q  394 gtcgttttggtattttaagg-tacgatttgtcaattataccct 435  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  23699571 gtcgtttttgtattttaaggatacgatttgtcaattataccct 23699529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 1674886 - 1674845
Alignment:
Q  393 tgtcgttttggtattttaagg-tacgatttgtcaattatacc 433  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  1674886 tgtcgttttagtattttaagggtacgatttgtcaattatacc 1674845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 435
Target Start/End: Original strand, 19578300 - 19578344
Alignment:
Q  392 ttgtcgttttggtattttaa-ggtacgatttgtcaattataccct 435  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  19578300 ttgtcgttttagtattttaatggtacgatttgtcaattataccct 19578344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 5493522 - 5493565
Alignment:
Q  393 tgtcgttttggtattttaagg-tacgatttgtcaattataccct 435  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  5493522 tgtctttttggtattttaagggtacgatttgtcaattataccct 5493565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 45646569 - 45646612
Alignment:
Q  393 tgtcgttttggtattttaa-ggtacgatttgtcaattataccct 435  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  45646569 tgtctttttggtattttaaaggtacgatttgtcaattataccct 45646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 25342493 - 25342455
Alignment:
Q  394 gtcgttttggtattttaa-ggtacgatttgtcaattata 431  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25342493 gtcgttttggtattttaaaggtacgatttgtcaattata 25342455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 37031082 - 37031040
Alignment:
Q  393 tgtcgttttggtattttaaggtacgatttgtcaattataccct 435  Q
    |||| ||||||||||||||  ||||||||||||||||||||||    
T  37031082 tgtctttttggtattttaaattacgatttgtcaattataccct 37031040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 20841290 - 20841331
Alignment:
Q  393 tgtcgttttggtattttaagg-tacgatttgtcaattatacc 433  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  20841290 tgtctttttggtattttaagggtacgatttgtcaattatacc 20841331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 44941007 - 44940966
Alignment:
Q  395 tcgttttggtattttaagg-tacgatttgtcaattataccct 435  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  44941007 tcgttttggtattttaagggtacgatttttcaattataccct 44940966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 36060307 - 36060264
Alignment:
Q  393 tgtcgttttggtattttaag-gtacgatttgtcaattataccct 435  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  36060307 tgtcgttttggtattttaagtgtacgatttgtcgattataccct 36060264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 19803634 - 19803672
Alignment:
Q  398 ttttggtattttaagg-tacgatttgtcaattataccct 435  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  19803634 ttttggtattttaagggtacgatttgtcaattataccct 19803672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 14890 - 14931
Alignment:
Q  393 tgtcgttttggtattttaa-ggtacgatttgtcaattatacc 433  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  14890 tgtcgttttggtattttaagggtatgatttgtcaattatacc 14931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 26252736 - 26252695
Alignment:
Q  393 tgtcgttttggtattttaa-ggtacgatttgtcaattatacc 433  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  26252736 tgtcgttttgatattttaaaggtacgatttgtcaattatacc 26252695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 25965990 - 25965949
Alignment:
Q  395 tcgttttggtattttaagg-tacgatttgtcaattataccct 435  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  25965990 tcgttttggtattttaagggtacgatttgtcaactataccct 25965949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 27746438 - 27746479
Alignment:
Q  393 tgtcgttttggtattttaa-ggtacgatttgtcaattatacc 433  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  27746438 tgtcgttttggtattttaagggtatgatttgtcaattatacc 27746479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 595
Target Start/End: Complemental strand, 42450408 - 42450371
Alignment:
Q  558 aaagagaaagagaggattgatgagattcgaaggctgaa 595  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  42450408 aaagagaaagtgaggattgatgagattcaaaggctgaa 42450371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University