View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-21 (Length: 526)
Name: NF1326-Insertion-21
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-21 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 157 - 526
Target Start/End: Original strand, 17381318 - 17381687
Alignment:
| Q |
157 |
taattttattccaatttgaaggtatagaaaggttaaatttcacacttcaattttgggcatgtggttgtaacctacctgtatatcaacagggtactttgtg |
256 |
Q |
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| T |
17381318 |
taatttaattccaatttgaaggta--gaaaggttaaatttcacact-caattttgggcatgtgattgtaacctacctgtatatcaacagggtactttgtg |
17381414 |
T |
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| Q |
257 |
acagtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcccatctgtccaaggcctttggtgtgatgt |
356 |
Q |
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| T |
17381415 |
actgtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcccatctgtccaaagcctttggtgtgatgt |
17381514 |
T |
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| Q |
357 |
gtgaagcattaggaccatccactaactcatctgttcttctgcaccacactgtagtaatacataaagagtggtcagtttcgaccgagg---accacaatcc |
453 |
Q |
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| T |
17381515 |
gtgaagcattaggaccatccactaactcatctgttcttctgcaccacactgtaataatacataaagagtggtcagtttctaccgaggaccaccacaatcc |
17381614 |
T |
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| Q |
454 |
acaatggagaagcctttgtaacagaaattttaaagttgctaattagacataccgtaaatggcccatatggctt |
526 |
Q |
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| T |
17381615 |
acaacggagaagcctttgttacagaaattttaaagttgctaattaggcataccgtaaatggcccatatggctt |
17381687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 17381129 - 17381267
Alignment:
| Q |
8 |
atatcttatctaatgcaagactttaacatcactcatagtcattctcaattatgt-gacactcaccacccttatgtgtgtgtcatacaagtaaaccttaga |
106 |
Q |
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| T |
17381129 |
atatctaatctattgcgagactttaacatcactcatagtcattc--aattatgttgacattcaccacccttatgtgtgtgtcatacaagcaaactttaga |
17381226 |
T |
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| Q |
107 |
gagatgaaatcaattttacctaatgttaagcaaacatattc |
147 |
Q |
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| T |
17381227 |
gagatgaaatcaattttacctaattttttgcaaacatattc |
17381267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 407
Target Start/End: Original strand, 39524313 - 39524491
Alignment:
| Q |
229 |
tacctgtatatcaacagggtactttgtgacagtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcc |
328 |
Q |
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| T |
39524313 |
tacctgaatatcaacggggtacttagagacactgagtgagagagcagcatcaaacatatcatatggtcgacattcaaaaacatcagttaaccgttgctcc |
39524412 |
T |
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| Q |
329 |
catctgtccaaggcctttggtgtgatgtgtgaagcattaggaccatccactaactcatctgttcttctgcaccacactg |
407 |
Q |
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| T |
39524413 |
catctgtccaaggctgctggtgtaatgtgtgaagaatttgggccatctactagttcatcagttcttctacaccaaactg |
39524491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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