View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-23 (Length: 381)
Name: NF1326-Insertion-23
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 35 - 381
Target Start/End: Original strand, 42232148 - 42232495
Alignment:
| Q |
35 |
ttgttgctgattctactcatgtgaatttggatgctgc-gtagaatctaagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaat |
133 |
Q |
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| T |
42232148 |
ttgtttctgattctactcatgtgtatttggatgctgctgtagaatctaagaatgtgagggtgtcgaggaattcgaagaataagaagaatgcagttgagat |
42232247 |
T |
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| Q |
134 |
ttgtgataacagggatatggagggtgttaaggaagtgaagaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgat |
233 |
Q |
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||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42232248 |
ttgtgataatggggatatggagggtgtggaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaacaagaagaatacagttgaggtttgtgat |
42232347 |
T |
|
| Q |
234 |
tcgagtaatggggatttggagggtgtcaaagagaaggtggaggaagtgaagaagaatgtgagggtgacaaggaatatgaggaataagatgaataaaatgg |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42232348 |
tcgagtaatggggatttggagggtgtcaaagagaaggtggaggaagtgaagaagaatgtgagggtgacaaggaatttgaggaataagatgaataaaatgg |
42232447 |
T |
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| Q |
334 |
ggacttttgaattgagtgttggggatttcgatggtgtgaaggagccga |
381 |
Q |
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| T |
42232448 |
ggacttctgaattgagtgttggggatttcgatggtgtgaaggagccga |
42232495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 165 - 373
Target Start/End: Complemental strand, 28946384 - 28946176
Alignment:
| Q |
165 |
gaagtgaagaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaaag |
264 |
Q |
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| T |
28946384 |
gaagtgaagaagaatgtgagggtgacaaggaattcgaagaataagaagaatgtggctaaaatttgtgattcaagtaatggagatttggagggtgtgaagg |
28946285 |
T |
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| Q |
265 |
agaaggtggaggaagtgaagaagaatgtgagggtgacaaggaatatgaggaataagatgaataaaatggggacttttgaattgagtgttggggatttcga |
364 |
Q |
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| T |
28946284 |
agaaggtggaggaagtaaagaaaaatgtgagggtgacaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtgttggggatttgga |
28946185 |
T |
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| Q |
365 |
tggtgtgaa |
373 |
Q |
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||||||||| |
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| T |
28946184 |
tggtgtgaa |
28946176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 326
Target Start/End: Complemental strand, 28946487 - 28946334
Alignment:
| Q |
173 |
gaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaaagagaaggtg |
272 |
Q |
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||||||||| |||| || |||||||||||||| ||||||||| | |||||| |||||||||| |||||||| ||||||| | ||| || ||||| || |
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| T |
28946487 |
gaagaatgctagggccacgaggaattcgaagaataagaagaatgctgttgagatttgtgattccagtaatggtaatttggatgatgtgaaggagaaagta |
28946388 |
T |
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| Q |
273 |
gaggaagtgaagaagaatgtgagggtgacaaggaatatgaggaataagatgaat |
326 |
Q |
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| T |
28946387 |
gaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaataagaagaat |
28946334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 28946530 - 28946427
Alignment:
| Q |
35 |
ttgttgctgattctactcatgtgaatttggatgctgcgtagaatctaagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatt |
134 |
Q |
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| T |
28946530 |
ttgttactgattctactaatgtgaatttggatcctg--tagaaccgaagaatgctagggccacgaggaattcgaagaataagaagaatgctgttgagatt |
28946433 |
T |
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| Q |
135 |
tgtgat |
140 |
Q |
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|||||| |
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| T |
28946432 |
tgtgat |
28946427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 28946375 - 28946316
Alignment:
| Q |
81 |
aagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatttgtgat |
140 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||| |
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| T |
28946375 |
aagaatgtgagggtgacaaggaattcgaagaataagaagaatgtggctaaaatttgtgat |
28946316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 165 - 373
Target Start/End: Complemental strand, 34823747 - 34823539
Alignment:
| Q |
165 |
gaagtgaagaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaaag |
264 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||| || | | |||||||||| |||||||| |||||||||||||| || | |
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| T |
34823747 |
gaagtgaagaagaatgtgagggtgacaaggaattcgaagaataagaagaatgtggctaaaatttgtgattcaagtaatggagatttggagggtgtaaagg |
34823648 |
T |
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| Q |
265 |
agaaggtggaggaagtgaagaagaatgtgagggtgacaaggaatatgaggaataagatgaataaaatggggacttttgaattgagtgttggggatttcga |
364 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||| |||||||||| || |
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| T |
34823647 |
agaaggtggaggaagtaaagaaaaatgtgagggtgacaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtattggggatttgga |
34823548 |
T |
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| Q |
365 |
tggtgtgaa |
373 |
Q |
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||||||||| |
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| T |
34823547 |
tggtgtgaa |
34823539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 326
Target Start/End: Complemental strand, 34823850 - 34823697
Alignment:
| Q |
173 |
gaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaaagagaaggtg |
272 |
Q |
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||||||||| |||| || |||||||||||||| ||||||||| | |||||| |||||||||| |||||||| ||||||| | ||| || ||||| || |
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| T |
34823850 |
gaagaatgcaagggccacgaggaattcgaagaataagaagaatgctgttgagatttgtgattccagtaatggtaatttggatgatgtgaaggagaaagta |
34823751 |
T |
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| Q |
273 |
gaggaagtgaagaagaatgtgagggtgacaaggaatatgaggaataagatgaat |
326 |
Q |
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|| ||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
34823750 |
gaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaataagaagaat |
34823697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 34823893 - 34823790
Alignment:
| Q |
35 |
ttgttgctgattctactcatgtgaatttggatgctgcgtagaatctaagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatt |
134 |
Q |
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||||| ||||||||||| |||||||||||||| ||| ||||| | ||||||| |||| |||||||||||||||||| |||||||||| ||||| ||| |
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| T |
34823893 |
ttgttactgattctactaatgtgaatttggatactg--tagaaccgaagaatgcaagggccacgaggaattcgaagaataagaagaatgctgttgagatt |
34823796 |
T |
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| Q |
135 |
tgtgat |
140 |
Q |
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|||||| |
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| T |
34823795 |
tgtgat |
34823790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 34823638 - 34823524
Alignment:
| Q |
163 |
aggaagtgaagaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaa |
262 |
Q |
| |
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||||||| ||||| |||| ||||||||||||||||| || ||| |||| |||| | | ||||| ||| | ||||| |||||||||||| ||||| || |
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| T |
34823638 |
aggaagtaaagaaaaatgtgagggtgacaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtattggggatttggatggtgtgaa |
34823539 |
T |
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| Q |
263 |
agagaaggtggagga |
277 |
Q |
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| T |
34823538 |
agagaaggtggagga |
34823524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 34823738 - 34823679
Alignment:
| Q |
81 |
aagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatttgtgat |
140 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||| |
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| T |
34823738 |
aagaatgtgagggtgacaaggaattcgaagaataagaagaatgtggctaaaatttgtgat |
34823679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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