View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-25 (Length: 321)
Name: NF1326-Insertion-25
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-25 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 2494822 - 2494511
Alignment:
| Q |
7 |
acaaagaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaacagcaacaccaaccgaccc |
106 |
Q |
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| T |
2494822 |
acaaagaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggctgtggtgaattcatgacatcaccaacagcaacaccaaccgaccc |
2494723 |
T |
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| Q |
107 |
aacatccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagccaccactctccaccaccactcatgtcattgaatat |
206 |
Q |
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| T |
2494722 |
aacatccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagccaccact---cacaaccactcatgtcattgaatat |
2494626 |
T |
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| Q |
207 |
caacctcacccccgtcatcaaccacttccaccaccaccgttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccct |
306 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494625 |
caacctcaccaccgtcatcaaccacttccaccaccaccgttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccct |
2494526 |
T |
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| Q |
307 |
ccgcccttcacatgc |
321 |
Q |
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|||||| |||||||| |
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| T |
2494525 |
ccgcccctcacatgc |
2494511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 3684085 - 3683923
Alignment:
| Q |
7 |
acaaagaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaacagcaacaccaaccgaccc |
106 |
Q |
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|||||||||||||||||||||| | |||| ||||||||||||||||||||| || ||| ||||||||||| |||||||||| || || | ||||| |
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| T |
3684085 |
acaaagaatgtctcaaaaaccacgtggcaaccctaggtggtcatgccctagacggttgttgtgaattcatgccatcaccaaccgccacctccgatgaccc |
3683986 |
T |
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| Q |
107 |
aacatccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaaga |
169 |
Q |
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| T |
3683985 |
tgcctccataaaatgtgccgcatgtggttgtcaccggaatttccaccgccgtgaaccggaaga |
3683923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 24181065 - 24181229
Alignment:
| Q |
7 |
acaaagaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaac-agcaacaccaaccgacc |
105 |
Q |
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||||||||||||||||||| ||||| ||| ||||||||| ||||| || ||||||||||||||||||||| || || || | ||| |||| |||| |
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| T |
24181065 |
acaaagaatgtctcaaaaatcatgctgcatccctaggtggacatgcacttgatggatgtggtgaattcatgccaccatcatctctcaatcccaa-tgacc |
24181163 |
T |
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| Q |
106 |
caacatccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagc |
171 |
Q |
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| T |
24181164 |
ctagatccctcaaatgtgctgcttgtggctgtcaccggaatttccaccgccgtgagccacaagagc |
24181229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 14021876 - 14021837
Alignment:
| Q |
115 |
taaaatgtgctgcttgtggctgccaccgtaacttccaccg |
154 |
Q |
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| T |
14021876 |
taaaatgtgctgcttgtaactgccaccgtaacttccaccg |
14021837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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