View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326-Insertion-3 (Length: 863)

Name: NF1326-Insertion-3
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326-Insertion-3
NF1326-Insertion-3
[»] chr2 (27 HSPs)
chr2 (8-557)||(16154921-16155482)
chr2 (8-481)||(16176642-16177113)
chr2 (8-485)||(16146289-16146764)
chr2 (584-711)||(16155549-16155676)
chr2 (587-711)||(16146966-16147090)
chr2 (28-144)||(16271101-16271217)
chr2 (587-711)||(14920440-14920564)
chr2 (592-711)||(21736422-21736541)
chr2 (592-711)||(35172455-35172574)
chr2 (592-711)||(7487947-7488066)
chr2 (26-148)||(16289203-16289325)
chr2 (587-711)||(36598285-36598409)
chr2 (768-847)||(16269684-16269762)
chr2 (768-847)||(20605229-20605307)
chr2 (768-847)||(24776348-24776426)
chr2 (768-847)||(31170763-31170841)
chr2 (768-847)||(43847639-43847717)
chr2 (482-562)||(7488136-7488216)
chr2 (768-847)||(305604-305682)
chr2 (768-847)||(14198716-14198794)
chr2 (488-538)||(21736636-21736686)
chr2 (431-480)||(14914082-14914131)
chr2 (488-536)||(16146822-16146871)
chr2 (712-791)||(12407270-12407354)
chr2 (712-791)||(20605042-20605126)
chr2 (712-791)||(24776245-24776329)
chr2 (712-791)||(31170860-31170944)
[»] chr8 (17 HSPs)
chr8 (592-711)||(43489054-43489173)
chr8 (591-711)||(42366189-42366309)
chr8 (712-847)||(24501949-24502088)
chr8 (768-847)||(2704955-2705033)
chr8 (768-847)||(5576757-5576835)
chr8 (768-847)||(23115304-23115382)
chr8 (768-847)||(26374566-26374644)
chr8 (768-847)||(32711418-32711496)
chr8 (768-847)||(41479089-41479167)
chr8 (768-847)||(42938253-42938331)
chr8 (761-847)||(7507035-7507120)
chr8 (770-836)||(10392383-10392449)
chr8 (481-529)||(9209032-9209080)
chr8 (713-764)||(42937250-42937304)
chr8 (488-538)||(43488909-43488959)
chr8 (712-791)||(23115401-23115485)
chr8 (712-791)||(42735510-42735594)
[»] chr4 (29 HSPs)
chr4 (592-711)||(56397591-56397710)
chr4 (592-711)||(42315047-42315166)
chr4 (713-847)||(25445983-25446119)
chr4 (768-847)||(22202006-22202084)
chr4 (768-847)||(24131109-24131187)
chr4 (768-847)||(25331122-25331200)
chr4 (768-847)||(41881220-41881298)
chr4 (772-847)||(1112888-1112962)
chr4 (768-847)||(37046589-37046667)
chr4 (768-847)||(39479494-39479572)
chr4 (772-847)||(46635779-46635853)
chr4 (484-557)||(28847114-28847187)
chr4 (761-847)||(34228720-34228805)
chr4 (768-848)||(40537281-40537360)
chr4 (768-847)||(1044800-1044876)
chr4 (768-847)||(7007365-7007443)
chr4 (768-847)||(25504776-25504854)
chr4 (768-847)||(32950973-32951051)
chr4 (768-847)||(55302834-55302912)
chr4 (488-538)||(56397446-56397496)
chr4 (713-764)||(7250036-7250090)
chr4 (712-791)||(41881317-41881402)
chr4 (768-847)||(30009814-30009892)
chr4 (661-703)||(37370712-37370754)
chr4 (482-563)||(8584011-8584092)
chr4 (712-791)||(22201903-22201987)
chr4 (486-563)||(32684184-32684261)
chr4 (712-754)||(39479631-39479675)
chr4 (807-836)||(42786714-42786743)
[»] chr3 (26 HSPs)
chr3 (592-711)||(23697155-23697274)
chr3 (592-711)||(85899-86018)
chr3 (592-711)||(23715611-23715730)
chr3 (592-711)||(23734067-23734186)
chr3 (592-711)||(23753730-23753849)
chr3 (709-847)||(33996678-33996812)
chr3 (772-863)||(51699599-51699690)
chr3 (768-847)||(3999782-3999860)
chr3 (768-847)||(19253818-19253896)
chr3 (768-847)||(20498200-20498278)
chr3 (768-847)||(37820614-37820692)
chr3 (768-847)||(33807936-33808014)
chr3 (768-847)||(35337726-35337804)
chr3 (712-791)||(20498098-20498181)
chr3 (778-847)||(53929265-53929333)
chr3 (768-863)||(29029997-29030092)
chr3 (768-847)||(10139283-10139361)
chr3 (488-538)||(23697008-23697058)
chr3 (488-538)||(23715463-23715513)
chr3 (488-538)||(23733919-23733969)
chr3 (807-847)||(3206342-3206381)
chr3 (768-847)||(1440089-1440168)
chr3 (768-836)||(6589555-6589623)
chr3 (488-538)||(23752377-23752427)
chr3 (712-791)||(996319-996403)
chr3 (712-791)||(3206430-3206514)
[»] chr7 (17 HSPs)
chr7 (592-711)||(12253208-12253327)
chr7 (592-711)||(33474669-33474788)
chr7 (768-847)||(973177-973255)
chr7 (768-847)||(30440789-30440867)
chr7 (761-836)||(40996795-40996871)
chr7 (768-847)||(47879161-47879239)
chr7 (768-847)||(47914259-47914337)
chr7 (768-847)||(7719396-7719474)
chr7 (488-538)||(12253422-12253472)
chr7 (768-847)||(18914871-18914949)
chr7 (768-847)||(34695266-34695344)
chr7 (586-711)||(3634346-3634471)
chr7 (807-847)||(7718498-7718537)
chr7 (768-836)||(8078388-8078457)
chr7 (715-791)||(20275496-20275577)
chr7 (488-533)||(33474521-33474566)
chr7 (712-791)||(44343629-44343713)
[»] chr5 (13 HSPs)
chr5 (592-704)||(3604277-3604389)
chr5 (587-706)||(378376-378495)
chr5 (768-847)||(21147059-21147137)
chr5 (768-863)||(27459068-27459163)
chr5 (712-847)||(7016875-7017014)
chr5 (714-848)||(16894037-16894174)
chr5 (661-711)||(27786420-27786470)
chr5 (586-711)||(9689162-9689287)
chr5 (768-847)||(33656177-33656257)
chr5 (807-847)||(849178-849217)
chr5 (481-538)||(3604484-3604541)
chr5 (715-764)||(5273224-5273276)
chr5 (712-791)||(21146956-21147040)
[»] chr1 (15 HSPs)
chr1 (761-847)||(21222125-21222210)
chr1 (768-847)||(730133-730211)
chr1 (592-706)||(39758120-39758233)
chr1 (592-706)||(39763474-39763587)
chr1 (768-847)||(50192688-50192766)
chr1 (768-846)||(28824510-28824587)
chr1 (711-791)||(49198501-49198586)
chr1 (712-791)||(730031-730114)
chr1 (706-791)||(953695-953785)
chr1 (768-847)||(45760146-45760225)
chr1 (768-847)||(47780696-47780774)
chr1 (586-711)||(27198413-27198538)
chr1 (712-791)||(28824606-28824690)
chr1 (718-764)||(48524208-48524256)
chr1 (712-791)||(50192785-50192869)
[»] scaffold0113 (1 HSPs)
scaffold0113 (712-845)||(39034-39171)
[»] chr6 (4 HSPs)
chr6 (768-847)||(6197614-6197692)
chr6 (768-847)||(1391615-1391693)
chr6 (768-847)||(656957-657034)
chr6 (712-791)||(2300971-2301055)
[»] scaffold0004 (1 HSPs)
scaffold0004 (713-847)||(102026-102165)
[»] scaffold0287 (1 HSPs)
scaffold0287 (586-711)||(11614-11739)
[»] scaffold0151 (1 HSPs)
scaffold0151 (807-847)||(38741-38780)


Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Original strand, 16154921 - 16155482
Alignment:
Q  8 caattaatacaggtagaaggtgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16154921 caattaatacaggtagaaggtgaatgcacaataattgttggtagttgtgcaaaaatagattgtgcaactcattgtcaagcatatggaaaaggtgttgctg 16155020  T
Q  108 ttttaggatcctcatgttcattctacaacttatgcacttgtagttatgatcagccaccaccagcattatca---ccaactggtcattgtgatattgggat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  16155021 ttttaggatcctcatgttcattctacaacttatgcacttgtagttatgatcagccaccaccagcattatcatcaccaactggtcattgtgatattgggat 16155120  T
Q  205 gggaatttgcactgatgactgtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgcctttcat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16155121 gggaatttgcactgatgactgtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgcctttcat 16155220  T
Q  305 atgcttttttgcatttgtaactatcttcgttgagtttgatcttaaaggaaatacaataagcatatatgatatattcctagctatttcaaatgtattctct 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16155221 atgcttttttgcatttgtaactatcttcgttgagtttgatcttaaaggaaatacaataagcatatatgatatattcctagcgatttcaaatgtattctct 16155320  T
Q  405 tcgtgattttattcatcaattaattg----atagaatagttaaccaaccgaatagaatattttgtaataattagttataataag--ggatgtattgaatt 498  Q
    ||||||||||||||||||||||||||    |||||||| || ||||||||||||||||||||||||||||||||||||||||||  || |||||||||||    
T  16155321 tcgtgattttattcatcaattaattgatatatagaataattgaccaaccgaatagaatattttgtaataattagttataataaggagggtgtattgaatt 16155420  T
Q  499 ---gagattttaaagaattttaattgacttttttatgataagacagtcgtgtggtattcaat 557  Q
        |||| | |||| |||||||| |||||| ||||||||||| ||||||||||||||||||    
T  16155421 aagaagatatcaaaggattttaatagactttattatgataagatagtcgtgtggtattcaat 16155482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 8 - 481
Target Start/End: Original strand, 16176642 - 16177113
Alignment:
Q  8 caattaatacaggtagaaggtgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctg 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  16176642 caattaatacaggtagaaggtgaatgcacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctg 16176741  T
Q  108 ttttaggatcctcatgttcattctacaacttatgcacttgtagttatgatcagccaccaccagcattatcaccaactggtcattgtgatattgggatggg 207  Q
    |||||||||| |||||||||| |||||||||||||||||||| || |||| |||||||||||| |||| ||||| ||||| |||||  ||||||||||||    
T  16176742 ttttaggatcatcatgttcatactacaacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatggg 16176841  T
Q  208 aatttgcactgatgactgtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgcctttcatatg 307  Q
    |||||||| || |||||||| |  ||| ||||||||||||| |||||||||| ||||||||||||| ||| |||||   |||||  ||||||||  ||||    
T  16176842 aatttgcaatggtgactgtcaagatgaatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaattgtgtcgatgcctttggtatg 16176941  T
Q  308 cttttttgcatttgtaactatcttcgttgagtttgatcttaaaggaaatacaataagcatatatgatatattcctagctatttcaaatgtattctcttcg 407  Q
     || ||||  |||||  ||||  ||||||| |||||||||| ||||||||||||||   | ||||  |||||| ||||||||||||||| |||||||||     
T  16176942 attctttgtctttgttcctatgatcgttgaatttgatcttagaggaaatacaataaatttgtatg--atattcatagctatttcaaatgcattctcttca 16177039  T
Q  408 tgattttattcatcaattaattgatagaatagttaaccaaccgaatagaatattttgtaataattagttataat 481  Q
    |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  16177040 tgattttattcaccaattaattgatagaatagttgaccaaccaaatagaatattttgtaataattagttataat 16177113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 485
Target Start/End: Original strand, 16146289 - 16146764
Alignment:
Q  8 caattaatacaggtagaaggtgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctg 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||| |  ||||||| |    || ||| |  | | || || ||| |||  ||    
T  16146289 caattaatacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtg 16146388  T
Q  108 ttttaggatcctcatgttcattctacaacttatgcacttgtagttatgatcagccaccaccagcattatcaccaactggtcattgtgatattgggatggg 207  Q
    |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| | |||  ||||| ||||| | |||| ||||||||||||    
T  16146389 ttttaggatcgtcatgttcattctataacttatgcacttgtacttatgatcagccaccacctggattgacaccacctggtaactgtggtattgggatggg 16146488  T
Q  208 aatttgcactgatgactgtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgcctttcatatg 307  Q
    ||||||||||| |||||||| |  ||||||||||||||||| |||||||||||||||||||||||| |||| ||||   |||||| ||||| || |||||    
T  16146489 aatttgcactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtagatatagtaaaacgggtgttgggaagtgtgttgatgcccttgatatg 16146588  T
Q  308 cttttttgcatttgtaactatcttcgttgagtttgatcttaaaggaaatacaataagcatatatgatatattcctagctatttcaaatgtattctcttcg 407  Q
      | ||||| |||||  ||||  |||||||||||||||||||||||||||||||||| || ||||  |||||| ||||||||||||||||||| |||||     
T  16146589 agtctttgcctttgttcctatgatcgttgagtttgatcttaaaggaaatacaataagtatgtatg--atattcatagctatttcaaatgtattatcttca 16146686  T
Q  408 tgattttattcatcaattaattgatagaatagttaaccaaccgaatagaatattttgtaataattagttataataagg 485  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16146687 tgattttattcatcaattaattgatagaatagttgaccaaccgaatagaatattttgtaataattagttataataagg 16146764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 584 - 711
Target Start/End: Original strand, 16155549 - 16155676
Alignment:
Q  584 aagcaacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatgg 683  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||| ||||||||||||    
T  16155549 aagcaacgaaatccgttggcattcaattgagatttctaagaaattttaaaatgtttcttggtattgaatattaaatggattttaatgaattcatttatgg 16155648  T
Q  684 aatggattgtgtgagactttttaattaa 711  Q
    ||| ||||||||||||||||||||||||    
T  16155649 aattgattgtgtgagactttttaattaa 16155676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 587 - 711
Target Start/End: Original strand, 16146966 - 16147090
Alignment:
Q  587 caacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaat 686  Q
    |||||||||||||||  |||| |||| |||||||||||| |||||||||||   |||  ||||||||||||||||||||||||  |||||||||||||||    
T  16146966 caacgaaatccgttgacattcaattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaat 16147065  T
Q  687 ggattgtgtgagactttttaattaa 711  Q
    |||||||||||||||||||||||||    
T  16147066 ggattgtgtgagactttttaattaa 16147090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 16271101 - 16271217
Alignment:
Q  28 tgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgttca 127  Q
    ||||||||||| |||| | ||||| ||||  |||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||    
T  16271101 tgaatgcacaaaaattataggtagatgtgataaagcaaattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcttcatgttca 16271200  T
Q  128 ttctacaacttatgcac 144  Q
    |||||||||||||||||    
T  16271201 ttctacaacttatgcac 16271217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 587 - 711
Target Start/End: Complemental strand, 14920564 - 14920440
Alignment:
Q  587 caacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaat 686  Q
    ||||||||||||||||||||| |||| |||||||| ||| || ||||||||  |||| |||||||||||| |  |||||||||| |||||||| ||||||    
T  14920564 caacgaaatccgttggtattcaattgagatttctaggaacttataaaatgtctcttggtattgaaaattagagagattttaatggattcatttgtggaat 14920465  T
Q  687 ggattgtgtgagactttttaattaa 711  Q
     ||||||||||||||||||| ||||    
T  14920464 agattgtgtgagactttttagttaa 14920440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 21736541 - 21736422
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||||||||||||||| |||  |||||||||||| || ||||||||  | || |||||||||||| ||||||||||||| |||||||| || ||||||||    
T  21736541 aaatccgttggtattcaattaagatttctaagaatttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 21736442  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  21736441 gtgtgagactttttagttaa 21736422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 35172574 - 35172455
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||||||||||||||| |||  ||||| |||||| || ||||||||| | || |||||||||||| ||||||||||||| |||||||| || ||||||||    
T  35172574 aaatccgttggtattcaattaagatttataagaacttataaaatgtttcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 35172475  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  35172474 gtgtgagactttttagttaa 35172455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 7488066 - 7487947
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||| ||||||||||| |||  |||||||||||| || ||||||||  | || |||||||||||| ||||||||||||| |||||||| || ||||||||    
T  7488066 aaattcgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 7487967  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  7487966 gtgtgagactttttagttaa 7487947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 16289203 - 16289325
Alignment:
Q  26 ggtgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgtt 125  Q
    ||||||||||||| |||||| ||||| ||||   || || ||||||||  |||||||||| |||||| ||||| |||||||||||||||||| |||||||    
T  16289203 ggtgaatgcacaaaaattgtgggtagatgtgatgaaataaattgtgcagttcattgtcaatcatatgcaaaagatgttgctgttttaggatcatcatgtt 16289302  T
Q  126 cattctacaacttatgcacttgt 148  Q
    |||||||| ||||||||| ||||    
T  16289303 cattctacgacttatgcatttgt 16289325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 587 - 711
Target Start/End: Complemental strand, 36598409 - 36598285
Alignment:
Q  587 caacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaat 686  Q
    ||||||||||||||||||||| |||  |||||||| ||| || ||||||||  |||| |||||||||||| |  |||||||||| |||||| | || |||    
T  36598409 caacgaaatccgttggtattcaattaagatttctaggaacttataaaatgtctcttggtattgaaaattagagagattttaatgaattcatctgtgaaat 36598310  T
Q  687 ggattgtgtgagactttttaattaa 711  Q
     ||||||||||||||||||| ||||    
T  36598309 agattgtgtgagactttttatttaa 36598285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 16269684 - 16269762
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  16269684 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 16269762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 20605229 - 20605307
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  20605229 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 20605307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 24776348 - 24776426
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  24776348 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 24776426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 31170841 - 31170763
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  31170841 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 31170763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 43847639 - 43847717
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  43847639 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 43847717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 482 - 562
Target Start/End: Complemental strand, 7488216 - 7488136
Alignment:
Q  482 aagggatgtattgaattgagattttaaagaattttaattgacttttttatgataagacagtcgtgtggtattcaattaaga 562  Q
    ||||| |||||||||||||||||| ||| ||||||||| ||||||||||||| |||| | || ||||||||| ||| ||||    
T  7488216 aaggggtgtattgaattgagatttcaaataattttaatagacttttttatgaaaagaaaatcttgtggtattgaatcaaga 7488136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 305682 - 305604
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||| ||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  305682 tgtgttattcaatcaagattatttgtcatttgaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 305604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 14198794 - 14198716
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||| ||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  14198794 tgtgttattcaatcaaaattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 14198716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 538
Target Start/End: Complemental strand, 21736686 - 21736636
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||| ||||    
T  21736686 tgtattgaattgagatttcaaaggattttaatagacttttttatgaaaaga 21736636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 14914082 - 14914131
Alignment:
Q  431 atagaatagttaaccaaccgaatagaatattttgtaataattagttataa 480  Q
    |||||||||||||| || | ||||||||||||||||||||||||| ||||    
T  14914082 atagaatagttaacgaaacaaatagaatattttgtaataattagtcataa 14914131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 16146822 - 16146871
Alignment:
Q  488 tgtattgaattgagattttaaag-aattttaattgacttttttatgataa 536  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  16146822 tgtattgaattgagattttaaagaaattttaatggacatttttatgataa 16146871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Original strand, 12407270 - 12407354
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||  ||||  |||||| ||||||||||| ||||||| |||| |||| ||||||||||||||    
T  12407270 ggggtgtattggatcatgattctaagagattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagattcttt 12407354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Original strand, 20605042 - 20605126
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagacttttt-atcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  ||||||||||| |||||| ||||||| |||| |||| |||||||| |||||    
T  20605042 ggggtgtattggatcatgattctaagggattttaaaagactttttaatcatgaaaaagtcttgtggtattcaatcaagactcttt 20605126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Original strand, 24776245 - 24776329
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  24776245 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 24776329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 31170944 - 31170860
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  31170944 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtgatattcaatcaagactcttt 31170860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 43489054 - 43489173
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||||||||||||||| |||  |||||||||||| || ||||||||  | || |||||||||||| ||||||||||||| |||||||| || ||||||||    
T  43489054 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 43489153  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  43489154 gtgtgagactttttagttaa 43489173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 591 - 711
Target Start/End: Original strand, 42366189 - 42366309
Alignment:
Q  591 gaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggat 690  Q
    ||||| |||||||||||  ||| |||||||| ||| || ||||||||  |||| |||||||||||| || |||||||||| |||||||| |||||| |||    
T  42366189 gaaattcgttggtattcatttgagatttctaggaacttataaaatgtctcttggtattgaaaattagacagattttaatggattcatttgtggaatagat 42366288  T
Q  691 tgtgtgagactttttaattaa 711  Q
    |||||||||||||||| ||||    
T  42366289 tgtgtgagactttttagttaa 42366309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 712 - 847
Target Start/End: Complemental strand, 24502088 - 24501949
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagacttttt-atcatgaaaa-gtct-gtgttattaaatcaagattctttgtcatttnnnnnnnt 806  Q
    ||||||||||||||||||||| ||| | ||||  ||||||||||| |||||||||| |||| |||||||| |||||||||||||| ||||||            
T  24502088 ggggtgtattggatcatgattctaaaggattttaaaagacttttttatcatgaaaaagtcttgtgttattcaatcaagattctttatcatttaaaaaaag 24501989  T
Q  807 tcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  24501988 tcttgtggtattcaatcaagactcttaat-cacttaaaaaa 24501949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 2705033 - 2704955
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  2705033 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 2704955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 5576835 - 5576757
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  5576835 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 5576757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 23115382 - 23115304
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  23115382 tgtgttattcaatcaagattctttgtcatttaaaaaatgtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 23115304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 26374644 - 26374566
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  26374644 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 26374566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 32711496 - 32711418
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  32711496 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 32711418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 41479089 - 41479167
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  41479089 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 41479167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 42938331 - 42938253
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||| ||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  42938331 tgtgttattcaatcaagattatttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 42938253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 761 - 847
Target Start/End: Complemental strand, 7507120 - 7507035
Alignment:
Q  761 aaaagtctgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    |||||| ||||||||| |||| |||||| |||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  7507120 aaaagtttgtgttattcaatcgagattccttgtcatttaagaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 7507035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 836
Target Start/End: Complemental strand, 10392449 - 10392383
Alignment:
Q  770 tgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatc 836  Q
    ||||||| |||||||||||||||||||||       |||||||| ||||||||||||||| ||||||    
T  10392449 tgttattcaatcaagattctttgtcattttaaaaaattcttgtgatattcaatcaagacttttaatc 10392383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 481 - 529
Target Start/End: Original strand, 9209032 - 9209080
Alignment:
Q  481 taagggatgtattgaattgagattttaaagaattttaattgactttttt 529  Q
    |||||| |||||||||||||||||| ||||||||||||  |||||||||    
T  9209032 taaggggtgtattgaattgagatttcaaagaattttaaaagactttttt 9209080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 764
Target Start/End: Original strand, 42937250 - 42937304
Alignment:
Q  713 gggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatgaaaa 764  Q
    |||||||||||||||||||||||||| ||||  |||||| |||||||||||||||    
T  42937250 gggtgtattggatcatgattttaagggattttaaaagacttttttatcatgaaaa 42937304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 43488909 - 43488959
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    ||||||||||||| |||| |||| |||||||| ||||||||||||| ||||    
T  43488909 tgtattgaattgaaatttcaaaggattttaatagacttttttatgaaaaga 43488959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 23115485 - 23115401
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  23115485 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 23115401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 42735594 - 42735510
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  42735594 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 42735510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 56397591 - 56397710
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||||||||||||||| |||  |||||||||||| || ||| ||||  | || |||||||||||| ||||||||||||| |||||||| || ||||||||    
T  56397591 aaatccgttggtattcaattaagatttctaagaacttataacatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 56397690  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  56397691 gtgtgagactttttagttaa 56397710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 42315047 - 42315166
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||||||||||||||| |||  ||||||||| || || ||||||||  | || |||||||||||| |||||||| |||| |||||||| || ||||||||    
T  42315047 aaatccgttggtattcaattaagatttctaaaaacttataaaatgtctcgtggtattgaaaattagacggatttcaatggattcatttgtgtaatggatt 42315146  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  42315147 gtgtgagactttttagttaa 42315166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 713 - 847
Target Start/End: Original strand, 25445983 - 25446119
Alignment:
Q  713 gggtgtattggatcatgattttaaggaattt--aaagacttttt-atcatgaaaa-gtct-gtgttattaaatcaagattctttgtcatttnnnnnnntt 807  Q
    ||||||||||||| |||||||||||| ||||  ||||||||||| |||||||||| |||| || ||||| |||||||||| ||||||||||       ||    
T  25445983 gggtgtattggat-atgattttaagggattttaaaagacttttttatcatgaaaaagtcttgtattattcaatcaagatt-tttgtcatttaaaaaaatt 25446080  T
Q  808 cttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  25446081 cttgtggtattcaatcaagactcttaat-cacttaaaaaa 25446119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 22202006 - 22202084
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  22202006 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 22202084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 24131187 - 24131109
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  24131187 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 24131109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 25331122 - 25331200
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  25331122 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 25331200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 41881298 - 41881220
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  41881298 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 41881220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 1112888 - 1112962
Alignment:
Q  772 ttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  1112888 ttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 1112962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 37046667 - 37046589
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        | ||||||||||||||||||||||||||| |||||||||||    
T  37046667 tgtgttattcaatcaagattctttgtcatttaaaaaaagttttgtggtattcaatcaagactcttaat-cacttaaaaaa 37046589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 39479572 - 39479494
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||| |||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  39479572 tgtgttattcaatcaagattccttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 39479494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 46635853 - 46635779
Alignment:
Q  772 ttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  46635853 ttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 46635779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 484 - 557
Target Start/End: Complemental strand, 28847187 - 28847114
Alignment:
Q  484 gggatgtattgaattgagattttaaagaattttaattgacttttttatgataagacagtcgtgtggtattcaat 557  Q
    ||||||||||| ||||||||||||||| |||||||  ||||||||||| |||| | ||||  ||||||||||||    
T  28847187 gggatgtattggattgagattttaaaggattttaaaagacttttttataataaaaaagtctagtggtattcaat 28847114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 761 - 847
Target Start/End: Complemental strand, 34228805 - 34228720
Alignment:
Q  761 aaaagtctgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    |||||||||||||||| |||||||||||||||||||||        || |||||||||||||||| | ||||||| |||||||||||    
T  34228805 aaaagtctgtgttattcaatcaagattctttgtcatttaaaaaaagtcatgtggtattcaatcaaaattcttaat-cacttaaaaaa 34228720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 768 - 848
Target Start/End: Complemental strand, 40537360 - 40537281
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaat 848  Q
    ||||||||| |||||||| ||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||    
T  40537360 tgtgttattcaatcaagactctttgtcatttaaaaaaagtcttgtggtattcaatcaaaactcttaat-cacttaaaaaat 40537281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 1044800 - 1044876
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||| |||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  1044800 tgtgttattcaatcaagattccttgtcatttaaaaag--tcttgtggtattcaatcaagactcttaat-cacttaaaaaa 1044876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 7007365 - 7007443
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||| ||||||||        || |||||||||||||||||||||||||| |||||||||||    
T  7007365 tgtgttattcaatcaagattctctgtcatttaaaaaaagtcatgtggtattcaatcaagactcttaat-cacttaaaaaa 7007443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 25504854 - 25504776
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||  ||||||       |||||||| ||||||||||||||||||||| |||||||||||    
T  25504854 tgtgttattcaatcaagattcttgatcatttaaaaaaattcttgtgatattcaatcaagactcttaat-cacttaaaaaa 25504776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 32951051 - 32950973
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||| ||||||||||        || |||||||||||||||||||||||||| |||||||||||    
T  32951051 tgtgttattcaatcaagattatttgtcatttaaaaaaagtcatgtggtattcaatcaagactcttaat-cacttaaaaaa 32950973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 55302834 - 55302912
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    |||||| || |||||||||||||||||||||        || |||||||||||||||||||||||||| |||||||||||    
T  55302834 tgtgtttttcaatcaagattctttgtcattttaaaaaagtcatgtggtattcaatcaagactcttaat-cacttaaaaaa 55302912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 56397446 - 56397496
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||| ||||    
T  56397446 tgtattgaattgagatttcaaaggattttaatagacttttttatgaaaaga 56397496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 764
Target Start/End: Complemental strand, 7250090 - 7250036
Alignment:
Q  713 gggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatgaaaa 764  Q
    |||||||||||||||||||| ||||||||||  |||||| |||||||||||||||    
T  7250090 gggtgtattggatcatgattctaaggaattttaaaagacttttttatcatgaaaa 7250036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 41881402 - 41881317
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac--tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||||||||| ||||  ||||||  ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  41881402 ggggtgtattggatcatgattttaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 41881317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 30009892 - 30009814
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||| ||||||| ||||||        || |||||||||||||||||||||||||| |||||||||||    
T  30009892 tgtgttatttaatcaaaattctttatcatttaaaaaaagtcctgtggtattcaatcaagactcttaat-cacttaaaaaa 30009814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 661 - 703
Target Start/End: Complemental strand, 37370754 - 37370712
Alignment:
Q  661 gattttaatgtattcatttatggaatggattgtgtgagacttt 703  Q
    |||||||||| |||| ||||||||||||||| |||||||||||    
T  37370754 gattttaatggattcttttatggaatggattttgtgagacttt 37370712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 563
Target Start/End: Complemental strand, 8584092 - 8584011
Alignment:
Q  482 aagggatgtattgaattgagattttaaagaattttaattgacttttttatgataagacagtcgtgtggtattcaattaagat 563  Q
    ||||| ||||||| |||||||||| |||| |||||||  |||||||||||  ||  | |||| ||||||||||||| |||||    
T  8584092 aaggggtgtattggattgagatttcaaaggattttaaaagacttttttattttataaaagtcttgtggtattcaatcaagat 8584011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Original strand, 22201903 - 22201987
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  22201903 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtgatattcaatcaagactcttt 22201987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 563
Target Start/End: Complemental strand, 32684261 - 32684184
Alignment:
Q  486 gatgtattgaattgagattttaaagaattttaattgacttttttatgataagacagtcgtgtggtattcaattaagat 563  Q
    |||||||||||||  |||| || ||||||||||  |||||||| || || | | |||| |||||||||||||||||||    
T  32684261 gatgtattgaattaggattctatagaattttaaaggactttttaattatgaaaaagtcttgtggtattcaattaagat 32684184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 754
Target Start/End: Complemental strand, 39479675 - 39479631
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagacttttt 754  Q
    |||||||||||||||||||||||||| |||||  |||||||||||    
T  39479675 ggggtgtattggatcatgattttaagaaattttaaaagacttttt 39479631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 836
Target Start/End: Original strand, 42786714 - 42786743
Alignment:
Q  807 tcttgtggtattcaatcaagactcttaatc 836  Q
    ||||||||||||||||||||||||||||||    
T  42786714 tcttgtggtattcaatcaagactcttaatc 42786743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 23697155 - 23697274
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    ||||||||| |||||| |||  |||||||||||| || ||||||||  | || |||||||||||| ||||||||||||| |||||||| || ||||||||    
T  23697155 aaatccgtttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 23697254  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  23697255 gtgtgagactttttagttaa 23697274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 85899 - 86018
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||||||||||||||| |||  ||||| |||||| || ||||||||  | || |||||||||||| |||||||||| || |||||||| || ||||||||    
T  85899 aaatccgttggtattcaattaagatttttaagaacttataaaatgtctcgtggtattgaaaattagacggattttactggattcatttgtgtaatggatt 85998  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  85999 gtgtgagactttttagttaa 86018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 23715611 - 23715730
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    ||||||||| | |||| |||  |||||||||||| || ||||||||  | || |||||||||||| ||||||||||||| |||||||| || ||||||||    
T  23715611 aaatccgtttgcattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 23715710  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  23715711 gtgtgagactttttagttaa 23715730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 23734067 - 23734186
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    ||||||||| | |||| |||  |||||||||||| || ||||||||  | || |||||||||||| ||||||||||||| |||||||| || ||||||||    
T  23734067 aaatccgtttgcattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 23734166  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  23734167 gtgtgagactttttagttaa 23734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 23753730 - 23753849
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    ||||| ||| |||||| |||  |||||||||||| || ||||||||  | || |||||||| ||| ||||||||||||| |||||||| || |||| |||    
T  23753730 aaatctgtttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaagttagacggattttaatggattcatttgtgtaatgaatt 23753829  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  23753830 gtgtgagactttttagttaa 23753849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 709 - 847
Target Start/End: Complemental strand, 33996812 - 33996678
Alignment:
Q  709 taaggggtgtattggatcatgattttaaggaattt--aaagacttttt-atcatgaaaagtctgtgttattaaatcaagattctttgtcatttnnnnnnn 805  Q
    |||||||||||||||||||||||| ||||| ||||  ||||||||||| ||||||||||        |||| |||||||||||||||||||||           
T  33996812 taaggggtgtattggatcatgattctaagggattttgaaagacttttttatcatgaaaaag------tattcaatcaagattctttgtcatttaaaaaaa 33996719  T
Q  806 ttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
     ||||||||||||||||||||||||||||| |||||||||||    
T  33996718 gtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 33996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 863
Target Start/End: Complemental strand, 51699690 - 51699599
Alignment:
Q  772 ttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaattctagt-gtattcaaa 863  Q
    ||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  51699690 ttattcaatcaagattctttgtcatttaaaaaaaatcttgtggtattcaatcaagactcttaat-cacttaaaaaaatctagtggtattcaaa 51699599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 3999860 - 3999782
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  3999860 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 3999782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 19253818 - 19253896
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  19253818 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 19253896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 20498200 - 20498278
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  20498200 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 20498278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 37820692 - 37820614
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||       |||||||||||||||||||||| ||||||| |||||||||||    
T  37820692 tgtgttattcaatcaagattctttgtcatttaaaaaaattcttgtggtattcaatcaagattcttaat-cacttaaaaaa 37820614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 33808014 - 33807936
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||| |||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  33808014 tgtgttattcaattaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 33807936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 35337726 - 35337804
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||| |||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  35337726 tgtgttattcaatcaagattccttgtcattttaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 35337804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 791
Target Start/End: Original strand, 20498098 - 20498181
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagactttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  ||||||||||||||||| ||||||| |||| |||| |||||||| |||||    
T  20498098 ggggtgtattggatcatgattctaagggattttaaaagactttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 20498181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 778 - 847
Target Start/End: Complemental strand, 53929333 - 53929265
Alignment:
Q  778 aatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  53929333 aatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 53929265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 768 - 863
Target Start/End: Original strand, 29029997 - 29030092
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaattctagt-gtattcaaa 863  Q
    ||||||||| ||| |||| ||||||||||||        ||||||||||||||||||||||||||||| ||||||||||| ||| || |||||||||    
T  29029997 tgtgttattcaattaagactctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaagtcttgtggtattcaaa 29030092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 10139361 - 10139283
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||| || ||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  10139361 tgtgttattcaatcaagattccttatcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 10139283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 23697008 - 23697058
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||| ||||    
T  23697008 tgtattgaattgaaatttcaaagaattttaatagacttttttatgaaaaga 23697058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 23715463 - 23715513
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||| ||||    
T  23715463 tgtattgaattgaaatttcaaagaattttaatagacttttttatgaaaaga 23715513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 23733919 - 23733969
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||| ||||    
T  23733919 tgtattgaattgaaatttcaaagaattttaatagacttttttatgaaaaga 23733969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 807 - 847
Target Start/End: Complemental strand, 3206381 - 3206342
Alignment:
Q  807 tcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  3206381 tcttgtggtattcaatcaagactcttaat-cacttaaaaaa 3206342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 1440168 - 1440089
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnt-tcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||         | ||||||||||||||||||||||||||| |||||||||||    
T  1440168 tgtgttattcaatcaagattctttgtcatttaaaaaaaagttttgtggtattcaatcaagactcttaat-cacttaaaaaa 1440089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 836
Target Start/End: Original strand, 6589555 - 6589623
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatc 836  Q
    ||||||||| |||||| |||| |||||||||        ||||||||||||||||||||||||||||||    
T  6589555 tgtgttattcaatcaatattccttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatc 6589623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 23752377 - 23752427
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    |||||||||||||||||| |||  |||||||| ||||||||||||| ||||    
T  23752377 tgtattgaattgagatttcaaattattttaatagacttttttatgaaaaga 23752427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 996403 - 996319
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  996403 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 996319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 3206514 - 3206430
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  3206514 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 3206430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 9e-23; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 12253327 - 12253208
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    ||||| |||||||||| |||  |||||||||||| || ||||||||  | || |||||||||||| ||| ||||||||| |||||||| || ||||||||    
T  12253327 aaatctgttggtattcaattaagatttctaagaacttataaaatgtctcatggtattgaaaattagacgaattttaatggattcatttgtgtaatggatt 12253228  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  12253227 gtgtgagactttttagttaa 12253208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 33474669 - 33474788
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||| ||||||||||| |||  |||||||||||| || |||||| |    || |||||||||||| ||||||||||||  |||||||| || ||||||||    
T  33474669 aaattcgttggtattcaattaagatttctaagaacttataaaatatcttgtggtattgaaaattagacggattttaattgattcatttgtgtaatggatt 33474768  T
Q  692 gtgtgagactttttaattaa 711  Q
    ||||||||||||||| ||||    
T  33474769 gtgtgagactttttagttaa 33474788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 973177 - 973255
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  973177 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 973255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 30440789 - 30440867
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  30440789 tgtgttattcaatcaagattctttgtcatttaaaaaaaatcttgtggtattcaatcaagactcttaat-cacttaaaaaa 30440867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 761 - 836
Target Start/End: Complemental strand, 40996871 - 40996795
Alignment:
Q  761 aaaagtct-gtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatc 836  Q
    |||||||| |||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  40996871 aaaagtctcgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaatc 40996795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 47879161 - 47879239
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        || |||||||||||||||||||||||||| |||||||||||    
T  47879161 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcatgtggtattcaatcaagactcttaat-cacttaaaaaa 47879239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 47914259 - 47914337
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        || |||||||||||||||||||||||||| |||||||||||    
T  47914259 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcatgtggtattcaatcaagactcttaat-cacttaaaaaa 47914337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 7719474 - 7719396
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||| ||| ||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  7719474 tgtgttattcaatcaatattatttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 7719396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 538
Target Start/End: Complemental strand, 12253472 - 12253422
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||| ||||    
T  12253472 tgtattgaattgagatttcaaaggattttaatagacttttttatgaaaaga 12253422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 18914949 - 18914871
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||| |||||||||| |||        ||||||||||||||||||||||||||||| |||||||||||    
T  18914949 tgtgttattcaatcaaaattctttgtcctttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 18914871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 34695266 - 34695344
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||| |||||||||        | ||||||||||||||||||||||||||| |||||||||||    
T  34695266 tgtgttattcaatcaagattccttgtcatttaaaaaaagttttgtggtattcaatcaagactcttaat-cacttaaaaaa 34695344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 711
Target Start/End: Original strand, 3634346 - 3634471
Alignment:
Q  586 gcaacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaa 685  Q
    |||||| ||||||||||||||| |||  ||||||| | || || ||||||||   ||| |||| |||| | ||  |||||| ||| |||| |||||||||    
T  3634346 gcaacggaatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaa 3634445  T
Q  686 tggattgtgtgagactttttaattaa 711  Q
    |||||| || ||||||||||| ||||    
T  3634446 tggattttgagagactttttagttaa 3634471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 807 - 847
Target Start/End: Complemental strand, 7718537 - 7718498
Alignment:
Q  807 tcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  7718537 tcttgtggtattcaatcaagactcttaat-cacttaaaaaa 7718498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 768 - 836
Target Start/End: Original strand, 8078388 - 8078457
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnt-tcttgtggtattcaatcaagactcttaatc 836  Q
    ||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  8078388 tgtgttattcaatcaagattctttgtcatttaaaaaagaatcttgtggtattcaatcaagactcttaatc 8078457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 791
Target Start/End: Complemental strand, 20275577 - 20275496
Alignment:
Q  715 gtgtattggatcatgattttaaggaattt--aaagac-tttttatcatgaa-aagtc-tgtgttattaaatcaagattcttt 791  Q
    |||||||||||||||||| ||||| ||||  |||||| ||||||||||||| ||||| |||| |||| ||||||||||||||    
T  20275577 gtgtattggatcatgattctaagggattttaaaagacttttttatcatgaataagtcttgtggtattcaatcaagattcttt 20275496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 533
Target Start/End: Original strand, 33474521 - 33474566
Alignment:
Q  488 tgtattgaattgagattttaaagaattttaattgacttttttatga 533  Q
    |||||||||||||||||| |||| |||||||| || ||||||||||    
T  33474521 tgtattgaattgagatttcaaaggattttaatagatttttttatga 33474566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 44343713 - 44343629
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  44343713 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 44343629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 704
Target Start/End: Complemental strand, 3604389 - 3604277
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    |||||||||||||||| |||  ||||| |||||| || ||||||||  | || |||||||||||| || |||||||||| ||||||||  | ||||||||    
T  3604389 aaatccgttggtattcaattaagatttttaagaacttataaaatgtctcgtggtattgaaaattagacagattttaatggattcatttgcgtaatggatt 3604290  T
Q  692 gtgtgagactttt 704  Q
    |||||||||||||    
T  3604289 gtgtgagactttt 3604277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 587 - 706
Target Start/End: Original strand, 378376 - 378495
Alignment:
Q  587 caacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaat 686  Q
    |||||||||  |||||||||| |||| |||||||||||| || ||||||||  || ||| |||||||||  |  |||||||||| |||| | ||||||||    
T  378376 caacgaaatatgttggtattcaattgagatttctaagaacttataaaatgtctctcgatgttgaaaatttgatagattttaatggattcttctatggaat 378475  T
Q  687 ggattgtgtgagacttttta 706  Q
    ||||||||||| ||||||||    
T  378476 ggattgtgtgaaacttttta 378495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 21147059 - 21147137
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  21147059 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 21147137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 768 - 863
Target Start/End: Complemental strand, 27459163 - 27459068
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaattctagt-gtattcaaa 863  Q
    ||||||||| ||| |||||||||||||||||        |||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  27459163 tgtgttattcaattaagattctttgtcatttaaaaaaagtcttgtagtattcaatcaagactcttaat-cacttaaaaaagtctagtggtattcaaa 27459068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 847
Target Start/End: Complemental strand, 7017014 - 7016875
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattctttgtcatttnnnnnnnt 806  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||   ||||            
T  7017014 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaag 7016915  T
Q  807 tcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  7016914 tcttgtagtattcaatcaagactcttaat-cacttaaaaaa 7016875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 714 - 848
Target Start/End: Complemental strand, 16894174 - 16894037
Alignment:
Q  714 ggtgtattggatcatgattttaaggaattt--aaagacttttt-atcatgaaaagtct-gtgttattaaatcaagattctttgtcatttnnnnnnnttct 809  Q
    ||||||||||||||| ||| ||||| ||||  ||||||||||| ||||| |||| ||| ||| |||| |||||| |||||||   ||||        |||    
T  16894174 ggtgtattggatcataattctaagggattttaaaagacttttttatcataaaaattcttgtggtattcaatcaaaattctttccaatttaaaaaaagtct 16894075  T
Q  810 tgtggtattcaatcaagactcttaatccacttaaaaaat 848  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  16894074 tgtggtattcaatcaagactcttaat-cacttaaaaaat 16894037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 711
Target Start/End: Original strand, 27786420 - 27786470
Alignment:
Q  661 gattttaatgtattcatttatggaatggattgtgtgagactttttaattaa 711  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||| ||||    
T  27786420 gattttaatggattcttttatggaatggattttgtgagactttttagttaa 27786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 711
Target Start/End: Complemental strand, 9689287 - 9689162
Alignment:
Q  586 gcaacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaa 685  Q
    |||||||||||||||||||||| |||| ||||||| |  | || |||||||| | |||||||| |||| || |  |||||||||| |||  |  |||||     
T  9689287 gcaacgaaatccgttggtattcaattgagatttctcattacttataaaatgtccattgatattcaaaaatacatagattttaatggattattggatggag 9689188  T
Q  686 tggattgtgtgagactttttaattaa 711  Q
    || ||| |||||||||||||| ||||    
T  9689187 tgaattttgtgagactttttagttaa 9689162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 33656257 - 33656177
Alignment:
Q  768 tgtgttattaaatcaagattcttt--gtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||||||  |||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  33656257 tgtgttattcaatcaagattctttttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 33656177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 807 - 847
Target Start/End: Original strand, 849178 - 849217
Alignment:
Q  807 tcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  849178 tcttgtggtattcaatcaagactcttaat-cacttaaaaaa 849217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 3604541 - 3604484
Alignment:
Q  481 taagggatgtattgaattgagattttaaagaattttaattgacttttttatgataaga 538  Q
    |||||| |||||||||||||||||| |||  |||||||| |||||| |||||| ||||    
T  3604541 taaggggtgtattgaattgagatttcaaatgattttaatagactttcttatgaaaaga 3604484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 764
Target Start/End: Complemental strand, 5273276 - 5273224
Alignment:
Q  715 gtgtattggatcatgattttaaggaattt--aaagac-tttttatcatgaaaa 764  Q
    |||||||||||||||||||||||| ||||  |||||| |||||||||||||||    
T  5273276 gtgtattggatcatgattttaagggattttaaaagacttttttatcatgaaaa 5273224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Original strand, 21146956 - 21147040
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  21146956 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcgtgtggtattcaatcaagactcttt 21147040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 761 - 847
Target Start/End: Original strand, 21222125 - 21222210
Alignment:
Q  761 aaaagtctgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    |||||| ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  21222125 aaaagtttgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 21222210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 730133 - 730211
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  730133 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 730211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 592 - 706
Target Start/End: Original strand, 39758120 - 39758233
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    ||||| |||||||||| |||  |||||||||||| || ||||||||   ||| |||||||||| |  | |||||||||| ||||||||  ||||||||||    
T  39758120 aaatctgttggtattcaattaagatttctaagaacttataaaatgtcttttggtattgaaaat-atgcagattttaatggattcatttggggaatggatt 39758218  T
Q  692 gtgtgagacttttta 706  Q
    |||||||||||||||    
T  39758219 gtgtgagacttttta 39758233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 592 - 706
Target Start/End: Original strand, 39763474 - 39763587
Alignment:
Q  592 aaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaatggatt 691  Q
    ||||| |||||||||| |||  |||||||||||| || ||||||||   ||| |||||||||| |  | |||||||||| ||||||||  ||||||||||    
T  39763474 aaatctgttggtattcaattaagatttctaagaacttataaaatgtcttttggtattgaaaat-atgcagattttaatggattcatttggggaatggatt 39763572  T
Q  692 gtgtgagacttttta 706  Q
    |||||||||||||||    
T  39763573 gtgtgagacttttta 39763587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 50192766 - 50192688
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||| |||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  50192766 tgtgttattcaatcaagattccttgtcattttaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 50192688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 768 - 846
Target Start/End: Complemental strand, 28824587 - 28824510
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaa 846  Q
    ||||||||| |||||||||| ||||||||||        ||||||||||||||||||||||||||||| ||||||||||    
T  28824587 tgtgttattcaatcaagattatttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaa 28824510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 791
Target Start/End: Complemental strand, 49198586 - 49198501
Alignment:
Q  711 aggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    |||||||||||||||||||||| ||||||||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  49198586 aggggtgtattggatcatgattctaaggaattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 49198501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 712 - 791
Target Start/End: Original strand, 730031 - 730114
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagactttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  ||||||||||| ||||| ||||||| |||| |||| |||||||| |||||    
T  730031 ggggtgtattggatcatgattctaagggattttaaaagactttttttcatgaaaaagtcttgtggtattcaatcaagactcttt 730114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 791
Target Start/End: Original strand, 953695 - 953785
Alignment:
Q  706 aattaaggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||| ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  953695 aattagggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 953785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 45760225 - 45760146
Alignment:
Q  768 tgtgttattaaatcaagattctttgtca-tttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||| |||        || |||||||||||||||||||||||||| |||||||||||    
T  45760225 tgtgttattcaatcaagattctttgtcaatttaaaaaaagtcatgtggtattcaatcaagactcttaat-cacttaaaaaa 45760146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 47780696 - 47780774
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||| | ||||||||        || |||||||||||||||||||||||||| |||||||||||    
T  47780696 tgtgttattcaatcaagattatatgtcatttaaaaaaagtcatgtggtattcaatcaagactcttaat-cacttaaaaaa 47780774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 711
Target Start/End: Original strand, 27198413 - 27198538
Alignment:
Q  586 gcaacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaa 685  Q
    |||||||||||||||||||||  |||| ||||||| |  | || |||||||| | ||| |||| |||| || |  |||||||||| |||| ||||| ||     
T  27198413 gcaacgaaatccgttggtattgaattgagatttctcattacttctaaaatgtccattggtattcaaaaatatatagattttaatggattcttttatagag 27198512  T
Q  686 tggattgtgtgagactttttaattaa 711  Q
    | |||| |||||||||| ||| ||||    
T  27198513 ttgattttgtgagacttcttagttaa 27198538  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 28824690 - 28824606
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  28824690 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 28824606  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 764
Target Start/End: Original strand, 48524208 - 48524256
Alignment:
Q  718 tattggatcatgattttaaggaattt--aaagactttttatcatgaaaa 764  Q
    ||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  48524208 tattggatcatgattctaaggaattttaaaagactttttatcataaaaa 48524256  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 50192869 - 50192785
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||| ||||||||| ||||||||||  |||||| ||||||| ||| ||||||| |||| |||| ||||||||||||||    
T  50192869 ggggtgtattgaatcatgattctaaggaattttaaaagacttttttattatgaaaaagtcttgtggtattcaatcaagattcttt 50192785  T

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Target: scaffold0113 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 712 - 845
Target Start/End: Complemental strand, 39171 - 39034
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattctttgtcatttnnnnnnnt 806  Q
    ||||||||||||||||||||| ||| | ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||||||||| ||||||            
T  39171 ggggtgtattggatcatgattctaatggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagattctttatcatttaaaaaaag 39072  T
Q  807 tcttgtggtattcaatcaagactcttaatccacttaaaa 845  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  39071 tcttgtggtattcaataaagactcttaat-cacttaaaa 39034  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 768 - 847
Target Start/End: Complemental strand, 6197692 - 6197614
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  6197692 tgtgttattcaatcaagattctttgtcatttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 6197614  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 1391615 - 1391693
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||| |||||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  1391615 tgtgttattcaatcaagattcattgtcatttaaataaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 1391693  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 656957 - 657034
Alignment:
Q  768 tgtgttattaaatcaagattctttgtcatttnnnnnnnttcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||| ||||||||||||||| |||||        ||||||||||||||||||||||||||||| |||||||||||    
T  656957 tgtgttattcaatcaagattctttg-catttaaaaaaagtcttgtggtattcaatcaagactcttaat-cacttaaaaaa 657034  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 791
Target Start/End: Complemental strand, 2301055 - 2300971
Alignment:
Q  712 ggggtgtattggatcatgattttaaggaattt--aaagac-tttttatcatg-aaaagtc-tgtgttattaaatcaagattcttt 791  Q
    ||||||||||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||| |||| |||| |||||||| |||||    
T  2301055 ggggtgtattggatcatgattctaagggattttaaaagacttttttatcatgaaaaagtcttgtggtattcaatcaagactcttt 2300971  T

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Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 713 - 847
Target Start/End: Original strand, 102026 - 102165
Alignment:
Q  713 gggtgtattggatcatgattttaaggaattt--aaagacttttt-atcatgaaaagtct-gtgttattaaatcaagattctttgtcatttnnnnnnnt-- 806  Q
    ||||||||| |||||||||| ||||| ||||  ||||||||||| || |  |||||| | |||||||| |||||||||||||||||||||              
T  102026 gggtgtattagatcatgattctaagggattttaaaagacttttttattaaaaaaagttttgtgttattcaatcaagattctttgtcatttaaaaaaagag 102125  T
Q  807 tcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  102126 tcttgtggtattcaatcaagactcttaat-cacttaaaaaa 102165  T

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Target: scaffold0287 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 711
Target Start/End: Complemental strand, 11739 - 11614
Alignment:
Q  586 gcaacgaaatccgttggtattcgattgtgatttctaagaaattttaaaatgttccttgatattgaaaattaaacggattttaatgtattcatttatggaa 685  Q
    |||||| ||||||||||||||| |||  ||||||| | || || ||||||||   ||| |||| |||| | ||  |||||| ||| |||| |||||||||    
T  11739 gcaacggaatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaa 11640  T
Q  686 tggattgtgtgagactttttaattaa 711  Q
    |||||| || ||||||||||| ||||    
T  11639 tggattttgagagactttttagttaa 11614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 807 - 847
Target Start/End: Complemental strand, 38780 - 38741
Alignment:
Q  807 tcttgtggtattcaatcaagactcttaatccacttaaaaaa 847  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  38780 tcttgtggtattcaatcaagactcttaat-cacttaaaaaa 38741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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