View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-30 (Length: 638)
Name: NF1326-Insertion-30
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-30 |
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Alignment Details
Target: chr4 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 7 - 629
Target Start/End: Original strand, 44107051 - 44107668
Alignment:
| Q |
7 |
aagatcaatgtcagcacttcaagagtgtggagaaaaggaagaatcacaatgattctattagggtaaagtaccttccgtactaggtcctgcaccgaaacgt |
106 |
Q |
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| T |
44107051 |
aagatcaatgtcagcacttcaagagagtggagaaaagaaagaatcacaatgattctattagggtaaagtaccttccgtactaggtcctgcaccgaaacgt |
44107150 |
T |
|
| Q |
107 |
gcatcaaaagcaaagcaaaatttcctttaacctccttactattttaacagtctgtacaaatatttcgaaagattcttttcttactatttttagcacaaga |
206 |
Q |
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| T |
44107151 |
gcatcaaaagcaaagcaaaatttcctttaacctccttactattttaacagtctgtacaaatatttcgaaagattattttcttactatttttagcacaaga |
44107250 |
T |
|
| Q |
207 |
tatttttctcatagttgttctcaactcaacacatttagctgattgacaacaaaaattataaatgattctatggtttggtttaaaattgattgaagtatca |
306 |
Q |
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| T |
44107251 |
tatttttctcatagttgttctcaac-----acatttagctgattgacaacaaaaattataaatgattctatagtttggtttaaaattgattgaagtatca |
44107345 |
T |
|
| Q |
307 |
tatccttaatagaaaacagaacttaataaaaactcaactttcacaaaaataaaccgggatacatcagtccattaatcaaaatcaattcacaaattgtcga |
406 |
Q |
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| T |
44107346 |
tatccttaa-agaaaacagaacttaataaaaactcaactttcacaaaaataaaccgggatacattagtccgttaatcaaaatcaattcacaaattgtcga |
44107444 |
T |
|
| Q |
407 |
tcattatttgttttgtctattatagtctgttgacataaaagaagcacaaaatgcatcaaattattggaacttatactatttgatttgatttgaagtgtgt |
506 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44107445 |
tcataatttgttttgtctattatagtctgttgacataaaagaagcacaaaatgcatcaaattattggaacttatactatttgatttgatttgaagtgtgt |
44107544 |
T |
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| Q |
507 |
attttacttgatgaaagctatcatttgatcacttgttgaatgtttcatttagtcttaataatgcatcttagtc-aaaggaacattatttacaactagaag |
605 |
Q |
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| T |
44107545 |
attttacttgatgaaagctatcatttgatcacttgttgaatgtttcatttagtcttaataatgcatcttagtcaaaaggaacattatttacaactagaag |
44107644 |
T |
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| Q |
606 |
gaatacatataagaaacttcattg |
629 |
Q |
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| T |
44107645 |
gaatacatgtaagaaacttcattg |
44107668 |
T |
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