View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-32 (Length: 415)
Name: NF1326-Insertion-32
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-32 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 42 - 263
Target Start/End: Complemental strand, 9867635 - 9867414
Alignment:
| Q |
42 |
ttagtggaacccttccgctcccatgatgtcgcatctctggcgaaattgcatattttgtagtggttttatcctaaaattgcataatattatttacataata |
141 |
Q |
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| T |
9867635 |
ttagtggaacccttccgctcccatgatgtctcacctctggcgaaattgcatattttgtagtggttttatcctaaaattgcataatattatttacataata |
9867536 |
T |
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| Q |
142 |
taagaaaatattcaaccacaacactttcatgataagttgtgattgtatttcttaatatatattcacgaatattcaaataattaattatgtgactggaaca |
241 |
Q |
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| T |
9867535 |
taagaaaatattcaatcacaacactttcatgataagttgtgattttatttcataatatatattcacgaatattcaaataattaattatgtgactggaaca |
9867436 |
T |
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| Q |
242 |
ccatgtaaattctttttacatt |
263 |
Q |
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| T |
9867435 |
ccatgtaaattctttttacatt |
9867414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 9867395 - 9867313
Alignment:
| Q |
251 |
ttctttttacattgtcaattatactaattaaaattttaattcaatgaactttgatattgggataagtagaaagttaataaaaa |
333 |
Q |
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| T |
9867395 |
ttctttttacattgtcaattatactaattaaaattttaattcaatgaactttgatattgggataagtagaaagttaataaaaa |
9867313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 9867306 - 9867268
Alignment:
| Q |
377 |
ttttgttccacaactgttttagagtcccaaaacttcata |
415 |
Q |
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| T |
9867306 |
ttttgttccacaactgtttttgagtcccaaaacttcata |
9867268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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