View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326-Insertion-4 (Length: 604)

Name: NF1326-Insertion-4
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326-Insertion-4
NF1326-Insertion-4
[»] chr2 (2 HSPs)
chr2 (5-604)||(45439000-45439601)
chr2 (20-92)||(45425815-45425887)


Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 5 - 604
Target Start/End: Original strand, 45439000 - 45439601
Alignment:
Q  5 acacacacactctccctcttttatggtgtgaatgaaaagtgtctctggagtttacttttcattgctcaggagccacaccatatccacaacaaagacccac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45439000 acacacacactctccctcttttatggtgtgaatgaaaagtgtctctggagtttacttttcattgctcaggagccacaccatatccacaacaaagacccac 45439099  T
Q  105 tccaattcggctgttaattttaggataatacttgtgtgactttttaaactagcactgaagcaagtaaatgacaatattagaatatactgaacatgcctgt 204  Q
    |||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45439100 tccaattcggctgttaattttaggataatatttgtgtaactttttagactagcactgaagcaaataaatgacaatattagaatatactgaacatgcctgt 45439199  T
Q  205 ttaagtattagtcttcatttgatcatcgtacaatcctatcatctactacccagagtatctgatagtcgtttgtaaaaactcttaagtttttgtgttaggg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45439200 ttaagtattagtcttcatttgatcatcgtacaatcctatcatctactacctagagtatctgatagtcgtttgtaaaaactcttaaatttttgtgttaggg 45439299  T
Q  305 agttgcaaggtattcaggtgattataaaacagcaatgaaagaagtaattccatacgaacattatagtagtagatccaagtactggtgcaacgtgatgtaa 404  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45439300 agttgcaaggtattcagataattataaaacagcaatgaaagaagtaattccatacgaacattatagtagtagatccaagtactggtgcaacgtgatgtaa 45439399  T
Q  405 ttttatctgttactaaacgaattcaaacaagctcatttgctt--tctgagttgtttgaggcaatgaaaacagcttgtatcaggctcacacaaagagtacc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45439400 ttttatctgttactaaacgaattcaaacaagctcatttgctttctctgagttgtttgaggcaatgaaaacagcttgtatcaggctcacacaaagagtacc 45439499  T
Q  503 ttcgaatttaaagaagtcaacatttagtaaaatactccttccttcccaaaactagtgacatagtttgactacatacactatttacataacatacttggat 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45439500 ttcgaatttaaagaagtcaacatttagtaaaatactccttccttcccaaaactagtgacatagtttgactacatacactatttacataacatacttggat 45439599  T
Q  603 ca 604  Q
    ||    
T  45439600 ca 45439601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 45425815 - 45425887
Alignment:
Q  20 ctcttttatggtgtgaatgaaaagtgtctctggagtttacttttcattgctcaggagccacaccatatccaca 92  Q
    |||||||||||| || |||||||||||||||| ||| || ||||||||  |||| ||| ||||| | ||||||    
T  45425815 ctcttttatggtttggatgaaaagtgtctctgaagtgtatttttcatttttcagaagcgacaccgtttccaca 45425887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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