View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326-Insertion-5 (Length: 668)

Name: NF1326-Insertion-5
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326-Insertion-5
NF1326-Insertion-5
[»] chr5 (1 HSPs)
chr5 (8-668)||(38128098-38128746)


Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 668
Target Start/End: Original strand, 38128098 - 38128746
Alignment:
Q  8 gttgtaataatagccactcgtgcaaatagtcttttcctgtcaagaggacgttggctgcagtaatcaacttattctcccacagtttagtgtttctacacct 107  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38128098 gttgtaataatagccactcgtgcaaataatcttttgctgtcaagaggacattggctgcagtaatcaacttattctcccacagtttggtgtttctacacct 38128197  T
Q  108 ccaaaagctccatatcaccgtcgcaacagccaacaagcacagttttttctgcatcaaaattctgacagatttgaaatgataatattagcaaaagtccagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  38128198 ccaaaagctccatatcaccgtcgcaacagccaacaagcacagttttttctgcatcaaaattctgacagatttgaaatgataatattagcaaaattccagg 38128297  T
Q  208 ctgtttgacagatttctggtatttctgtacttcaatgcgacagattccaagtgttccttgcatgagcacatgttaaaagacaatggatcgaatcctccaa 307  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  38128298 ctgtttaacagattgctggtatttctgtacttaaatgcaacagattccaagtgttcctcgcgtgagcacatgtaaaaagacaatggatcgaatcctccaa 38128397  T
Q  308 gtcagtatctcataatagaacgcagactgtgcgagtgctcgatgatcttctgcatacatagcctataacctttcttaacagcatatgatccattgcgcgt 407  Q
    ||||||||| |   ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38128398 gtcagtatccc---atagaacacagactgtgtgagtgctcgataatcttctgcatacatagcctataacctttcttaacagcatatgatccatcgcgcgt 38128494  T
Q  408 agtgctacaaaaaatatggtcctagatggtccgattgaagagaggaatggcaagtatgcctcatgcatctgcagcgtcgaaaaggttataagcagactca 507  Q
    |||||||||||||||           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38128495 agtgctacaaaaaat----------ctggtccaattgaagagaggaatggcaagtatgcctcatgcatctgcagcgtcgaaaaggttataagcggactca 38128584  T
Q  508 gcattccatgacagtctatctgtagtataatactgcttactatcaacttacatgtttggcttcttaaatcaccaaactaccaaattatcactcctagtga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38128585 gcattccatgacagtctatctgtagtataatactgcttactatcaacttacatgtttggcttcttaaatcaccaaactaccaaattatcactcgtagtga 38128684  T
Q  608 tag-aaaatgtagaattaaatgctaacgtgtaaattatgtacttttgtttggccctttactc 668  Q
    ||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  38128685 tagaaaaatgtagaattaaatgctaacatgtaaattatgtacttgtgtttggccctttactc 38128746  T

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