View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326-Insertion-7 (Length: 634)
Name: NF1326-Insertion-7
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 300 - 606
Target Start/End: Original strand, 40823992 - 40824301
Alignment:
| Q |
300 |
atgcttctataaccacttt-attcataagcacttggttttttatttccataatgaggaagcctttttaatttgatgctaaataggaagtgtagtggtaca |
398 |
Q |
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| T |
40823992 |
atgcttctataaccacttttattcataagcactcggttttttatttccataatgaggaagcctttttaatttgatgctaaataggaagtgtagtggtaca |
40824091 |
T |
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| Q |
399 |
ttcctaaaaggtcagattcgactatcttttgaagttatccaatagcacagttcgttaagaatatgtcatgaagacctaataaatgagtcaagtccaagtc |
498 |
Q |
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| T |
40824092 |
ttcctaaaaggtcagattcgactatcttttgaagttatccaatagcaaagttcgttaagaatatgtcatgaagacctaataaatgagtcaagtccaagtc |
40824191 |
T |
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| Q |
499 |
tattgaagtgaccaccttattccaccacatcgtgcaacac-agatcctacctactttaccatcaaagcgacgtgtggcac-agaaaataaacttcaacgt |
596 |
Q |
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| T |
40824192 |
tattgaagtgaccatcttgttctatcacatcgtgcaacacaagatcctacctactttaccatcagagcgacgtgtggcacaagaaaataaacttcaacga |
40824291 |
T |
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| Q |
597 |
cgtctcaaga |
606 |
Q |
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| T |
40824292 |
cgtctcaaga |
40824301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 40823752 - 40823972
Alignment:
| Q |
22 |
aattgactcaatccannnnnnnaatgcctaactgcaccttatatatacacatcactaattttatatttttaatattattacttaataaacacaatttctc |
121 |
Q |
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| T |
40823752 |
aattgactcaatccatttttttaatgcctaactgcaccttatatatacacatcactaattttatatttttaatattattacttaataaacacaatttctc |
40823851 |
T |
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| Q |
122 |
catcctaacaccttagtttttcttattaaatagatgtcgtaaataactttgcatcattatatttcaataaagtttatttattttaatgcaattattaagt |
221 |
Q |
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| T |
40823852 |
catcctaacaccttagtttttcttattaaatagatgtcttaaataactttgtatcattatatttcaataaagtttatttattttaatgcaatcattaagt |
40823951 |
T |
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| Q |
222 |
gggcatgcaaaaaggagggag |
242 |
Q |
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| T |
40823952 |
gggcatgcaaaaaggggggag |
40823972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 26576025 - 26576087
Alignment:
| Q |
144 |
ttattaaatagatgtcgtaaataactttgcatcattatatttcaataaagtttatttatttta |
206 |
Q |
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| T |
26576025 |
ttattaaatagatctcataaataattttatatcattacatttcaacaaaatttatttatttta |
26576087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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