View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326-Insertion-8 (Length: 818)

Name: NF1326-Insertion-8
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326-Insertion-8
NF1326-Insertion-8
[»] chr1 (21 HSPs)
chr1 (8-748)||(8280860-8281608)
chr1 (298-632)||(35109468-35109797)
chr1 (282-631)||(10996771-10997121)
chr1 (333-620)||(32736939-32737229)
chr1 (333-568)||(27104367-27104602)
chr1 (377-498)||(13598310-13598432)
chr1 (370-498)||(29651716-29651845)
chr1 (381-437)||(48382607-48382663)
chr1 (546-629)||(17345453-17345536)
chr1 (417-498)||(47703999-47704081)
chr1 (333-439)||(16124640-16124751)
chr1 (320-378)||(17345707-17345766)
chr1 (281-360)||(48591013-48591092)
chr1 (281-360)||(48600708-48600787)
chr1 (320-378)||(50521291-50521350)
chr1 (377-498)||(775584-775706)
chr1 (672-706)||(6354262-6354296)
chr1 (529-610)||(918433-918514)
chr1 (670-699)||(2210668-2210697)
chr1 (338-438)||(9023956-9024059)
chr1 (670-703)||(15864772-15864805)
[»] scaffold0076 (1 HSPs)
scaffold0076 (281-568)||(15983-16265)
[»] chr4 (17 HSPs)
chr4 (281-706)||(37781673-37782108)
chr4 (415-706)||(34670517-34670810)
chr4 (281-604)||(873477-873809)
chr4 (298-437)||(4956015-4956157)
chr4 (454-622)||(8114679-8114843)
chr4 (320-498)||(25862085-25862269)
chr4 (370-498)||(39245899-39246028)
chr4 (377-483)||(38152517-38152623)
chr4 (377-498)||(54867096-54867218)
chr4 (527-568)||(39593789-39593830)
chr4 (333-498)||(10047242-10047413)
chr4 (378-504)||(5147590-5147717)
chr4 (672-706)||(873370-873404)
chr4 (515-621)||(18912305-18912411)
chr4 (337-402)||(42234512-42234574)
chr4 (519-568)||(4956232-4956281)
chr4 (374-478)||(42599657-42599762)
[»] chr2 (15 HSPs)
chr2 (372-706)||(28770626-28770964)
chr2 (280-568)||(16388465-16388760)
chr2 (370-629)||(2869626-2869886)
chr2 (370-513)||(3277908-3278051)
chr2 (281-378)||(16388259-16388355)
chr2 (320-498)||(33528684-33528868)
chr2 (370-537)||(8390176-8390341)
chr2 (577-629)||(15903824-15903876)
chr2 (517-630)||(18674334-18674447)
chr2 (320-498)||(20522070-20522254)
chr2 (333-482)||(8039923-8040078)
chr2 (370-568)||(13569234-13569430)
chr2 (320-441)||(31055892-31056018)
chr2 (377-513)||(33118048-33118185)
chr2 (377-568)||(34388771-34388960)
[»] chr6 (10 HSPs)
chr6 (320-568)||(33721554-33721804)
chr6 (308-632)||(98998-99321)
chr6 (307-632)||(1115035-1115361)
chr6 (320-568)||(10077160-10077412)
chr6 (370-496)||(22963605-22963732)
chr6 (370-496)||(23824661-23824788)
chr6 (377-483)||(5017547-5017653)
chr6 (320-441)||(31979363-31979489)
chr6 (320-377)||(31077146-31077203)
chr6 (519-632)||(30518059-30518172)
[»] chr5 (10 HSPs)
chr5 (337-620)||(5611009-5611295)
chr5 (315-448)||(34842449-34842587)
chr5 (333-472)||(3880166-3880307)
chr5 (333-498)||(17004023-17004193)
chr5 (333-378)||(2630087-2630132)
chr5 (340-378)||(28537489-28537527)
chr5 (281-378)||(30899668-30899765)
chr5 (517-604)||(30899918-30900005)
chr5 (320-498)||(42127473-42127656)
chr5 (377-498)||(24553569-24553691)
[»] chr3 (12 HSPs)
chr3 (337-620)||(21156296-21156582)
chr3 (281-632)||(25516791-25517148)
chr3 (333-604)||(29100033-29100298)
chr3 (320-396)||(47924028-47924106)
chr3 (320-568)||(8370472-8370724)
chr3 (415-629)||(4386851-4387065)
chr3 (320-498)||(30709843-30710028)
chr3 (370-438)||(34482106-34482174)
chr3 (510-606)||(44658440-44658536)
chr3 (415-610)||(1736247-1736442)
chr3 (377-498)||(18552936-18553058)
chr3 (377-438)||(25929556-25929617)
[»] chr7 (9 HSPs)
chr7 (415-604)||(28617184-28617372)
chr7 (377-498)||(55860-55982)
chr7 (377-498)||(4796730-4796852)
chr7 (377-498)||(20284001-20284123)
chr7 (370-498)||(46516373-46516502)
chr7 (370-441)||(2647817-2647888)
chr7 (555-621)||(5817212-5817278)
chr7 (377-498)||(33332513-33332635)
chr7 (371-445)||(23575488-23575564)
[»] scaffold0016 (1 HSPs)
scaffold0016 (457-630)||(102427-102598)
[»] scaffold0006 (2 HSPs)
scaffold0006 (377-498)||(2404-2526)
scaffold0006 (377-498)||(5595-5717)
[»] scaffold0036 (1 HSPs)
scaffold0036 (320-441)||(85535-85659)
[»] scaffold0148 (1 HSPs)
scaffold0148 (370-513)||(10634-10778)
[»] chr8 (12 HSPs)
chr8 (414-513)||(23799625-23799725)
chr8 (660-702)||(33503697-33503740)
chr8 (371-437)||(11771855-11771921)
chr8 (320-498)||(5702546-5702730)
chr8 (333-378)||(5990748-5990793)
chr8 (321-378)||(9055025-9055082)
chr8 (307-371)||(7493264-7493328)
chr8 (284-371)||(8863833-8863920)
chr8 (356-407)||(32916304-32916355)
chr8 (456-621)||(9054779-9054942)
chr8 (378-437)||(28387895-28387955)
chr8 (363-445)||(34477335-34477417)


Alignment Details
Target: chr1 (Bit Score: 640; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 8 - 748
Target Start/End: Original strand, 8280860 - 8281608
Alignment:
Q  8 aattttaacttgtataaaaagttaacccacgtaatatatactccaaatatgtaaccagatatgatactcacgcatagacgtcaataatcggagaaactaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8280860 aattttaacttgtataaaaagttaacccacgtaatatatactccaaatatgtaaccagatatgatactcacgcatagacgtcaataatccgagaaactaa 8280959  T
Q  108 attgatgaatgaatacaattacatgaataagtatttagttggatgctagcgtaaatgtctagcattgaagcacatatattcttctcaaattaggcggatc 207  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8280960 attaatgaatgaatacaattacatgaataagtatttagttggatgctagcgtaaatgtctagcattgaagcacatatattcttctcaaattaggcggatc 8281059  T
Q  208 gcagtgttagacacaagtttgtgtttgacagttgrcgcaacatgatattgatatatacgattatattgaattatgttgtgaattcaaactaataataata 307  Q
    |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281060 gcagtgttggacacaagtttgtgtttgacaattgacgcaacatgatattgatatatacgattatattgaattatgttgtgaattcaaactaataataata 8281159  T
Q  308 ccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaacagacctagatctaagtatgaagcaaca 407  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281160 ccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaagcaacaacaaacagacctagatctaagtatgaagcaaca 8281259  T
Q  408 tcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggagg 507  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281260 tcagacacataatcaaagcaacagagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggagg 8281359  T
Q  508 aaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatcc 607  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  8281360 aaagagaataactctctgatccactatgataagaatgatacaaatatgttacaagaaattaacataatcgctcacaaagaacaaattctaatttctatca 8281459  T
Q  608 attatttaagtcacccgcactcac-atg-atccaaagag-aaacactaaagg-agattttttattctt-ctctaatgagatctcactacccaaggtgttt 702  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||    
T  8281460 attatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagtttttttattcttcctctaatgagatctcactacccaaggtgttt 8281559  T
Q  703 ac-aatggttcc--acacaagaaaaaactctcatcaaagatgcccaacc 748  Q
    || |||||||||  |||||||||||||||||||||||||||||||||||    
T  8281560 acaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaacc 8281608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 298 - 632
Target Start/End: Complemental strand, 35109797 - 35109468
Alignment:
Q  298 aataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaacagacctagatctaagta 397  Q
    |||||| | ||||||| ||||||||||||||||  |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||     
T  35109797 aataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatgca--aagtagtctcaagcaacaacaaacagacctagatctaagtg 35109700  T
Q  398 tgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacct 497  Q
     | | ||||| || | ||||||| |||| |||||||| ||| |||||| ||| || |||||||||| | ||||||||| ||||| | | |||||||||||    
T  35109699 cggaacaacaccacaaacataattaaagaaacaaagagaagaaagaagagaaagaaacaacacaccgatattgtttactcagtttggtccaaaatgacct 35109600  T
Q  498 actttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattcta 597  Q
    | | | ||||  |||||  ||||||| ||| |||||||||||||  |||||||||| |||||||||||||| | ||   ||||||||||||||||   ||    
T  35109599 aatct-gagg--agagacaagctctctgatccactatgataagatagatacaaataggttacaagaaattagcttaaaagctcacaaagaacaaacctta 35109503  T
Q  598 atttctatccattatttaagtcacccgcactcaca 632  Q
    ||||||| ||| | || ||||||| | ||||||||    
T  35109502 atttctacccaattttcaagtcacacacactcaca 35109468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 282 - 631
Target Start/End: Original strand, 10996771 - 10997121
Alignment:
Q  282 gttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaaca 381  Q
    ||||||||||| ||| || ||| | ||||||| |||||| || |||||| ||||| ||||||||||||||||||||||||| ||||||  |||||||| |    
T  10996771 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagtagcctcaaggtacaacaaata 10996870  T
Q  382 gacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-------gaagggaaggagacaacacaccaacattgttta 474  Q
    | |||| |  ||||| |||||||||| || |  || | ||| |||||| |||||||  ||       | ||  ||  | |||||||||||| ||||||||    
T  10996871 gtcctaaaattaagtgtgaagcaacaccacatgcagattcatagcaacgaagataaaaaaaaaaagtggagaaaattaaacaacacaccaatattgttta 10996970  T
Q  475 cccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatat 574  Q
    ||||||||| |  | ||||||||||| | |  |||||     | ||||  ||| |||||  |||||| |||||||||||||||||||||||||||| ||     
T  10996971 cccagttcggtttagaatgacctactcttggtgaaag----caactctttgatccacta--ataagagtgatacaaatatgttacaagaaattaacttaa 10997064  T
Q  575 tcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcac 631  Q
      | | ||||| ||||||  |||||||||| ||||| || ||||||||| |||||||    
T  10997065 aagataacaaataacaaaccctaatttctacccatttttcaagtcaccctcactcac 10997121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 333 - 620
Target Start/End: Complemental strand, 32737229 - 32736939
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaa 428  Q
    ||||||||| || ||||||||  ||||||| |||||||||||||||    |||||| ||||||||||| |||||||||| || | | ||||||||||| |    
T  32737229 aaaggaagtggtgatcaatgagcaaagtagcctcaagcaacaacaacgaaacagacttagatctaagtgtgaagcaacaccacaaatataatcaaagcta 32737130  T
Q  429 caaagataagcaagaag-ggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgat 527  Q
    ||| || ||| |||||| | ||| | || | |||| || ||||| ||| ||| ||||| |||||||||||||| ||  ||| |||||  | ||||| |||    
T  32737129 caatgaaaagaaagaagagaaagaaaactagacacaaatattgtgtactcagatcgatccaaaatgacctactctg--ggagagagagaaactctctgat 32737032  T
Q  528 tcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtca 620  Q
      |||||||| |   ||||||||| | ||||||| |||||| | ||   | ||| ||||||||||  |||||||||| ||||| || ||||||    
T  32737031 caactatgatgaaggtgatacaaagaggttacaaaaaattagcttaaaagttcataaagaacaaaccctaatttctacccatttttcaagtca 32736939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 333 - 568
Target Start/End: Complemental strand, 27104602 - 27104367
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa-cagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 430  Q
    ||||||||| |||||||||  ||||||| ||||| ||||||||||||| |||||||| |||||||| |  ||||||| || |  |||||||||||||| |    
T  27104602 aaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaata 27104504  T
Q  431 aagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattc 529  Q
    ||||||||||| |||   |||||   |||||||||| |||||| || ||||||| | ||| || ||||| | ||| ||  |||||  |||||||| || |    
T  27104503 aagataagcaatgaaataaaggaacaaacacaccaagattgttgacacagttcggtccaatataacctaatctggggg--agagagcagctctccaatcc 27104406  T
Q  530 actatgataagaatgatacaaatatgttacaagaaatta 568  Q
    |||||||| | | || ||||||   ||||||||||||||    
T  27104405 actatgatgaaagtgttacaaaagagttacaagaaatta 27104367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 13598310 - 13598432
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    |||||||||||||||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  13598310 aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 13598409  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    |||||||| | ||| ||||||||    
T  13598410 ccagttcggtccaatatgaccta 13598432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 498
Target Start/End: Original strand, 29651716 - 29651845
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 468  Q
    |||||| |||||||| ||||||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| ||    
T  29651716 caacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagat 29651815  T
Q  469 tgtttacccagttcgatgcaaaatgaccta 498  Q
    | || |||||||||| | ||| ||||||||    
T  29651816 ttttgacccagttcggtccaatatgaccta 29651845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 48382663 - 48382607
Alignment:
Q  381 agacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 437  Q
    |||||||||||||||| |||||||||| || | ||||||| ||||||||||||||||    
T  48382663 agacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataa 48382607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 546 - 629
Target Start/End: Complemental strand, 17345536 - 17345453
Alignment:
Q  546 tacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactc 629  Q
    ||||||| || |||||||||||| ||||   || |||||||||||||  |||||||||| ||||| |||||||||||| |||||    
T  17345536 tacaaatgtgctacaagaaattagcataagagcccacaaagaacaaaacctaatttctacccattttttaagtcacccacactc 17345453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 498
Target Start/End: Complemental strand, 47704081 - 47703999
Alignment:
Q  417 taatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 498  Q
    |||||||||||| |||||||||||| ||| | ||||| | |||||||||| |||||| |||||||||| | ||| ||||||||    
T  47704081 taatcaaagcaataaagataagcaatgaaagaaaggaaaaaacacaccaagattgttgacccagttcggtccaatatgaccta 47703999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 439
Target Start/End: Complemental strand, 16124751 - 16124640
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagta-gtctcaagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 426  Q
    ||||||||| |||||||||||||||| |  ||| |||||||||||||     |||||||||||||||| | |  ||||||| || | |||||||||||||    
T  16124751 aaaggaagtggtaatcaatgaataaaatgtgtc-caagcaacaacaacaaaaacagacctagatctaaatgtagagcaacaccacaaacataatcaaagc 16124653  T
Q  427 aacaaagataagc 439  Q
    || ||||||||||    
T  16124652 aataaagataagc 16124640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 17345766 - 17345707
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaat-aaagtagtctcaagcaacaacaa 378  Q
    |||||||| ||  ||||||||||||||||||||| | ||||||| |||||||||||||||    
T  17345766 agatgtgtggagcaaaggaagtagtaatcaatgagtaaaagtagcctcaagcaacaacaa 17345707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 48591092 - 48591013
Alignment:
Q  281 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagt 360  Q
    |||||||||||||||  |||||| | | ||||| |||||||||||||  | |||| ||| |||||||||||||| |||||    
T  48591092 tgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagt 48591013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 48600787 - 48600708
Alignment:
Q  281 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagt 360  Q
    |||||||||||||||  |||||| | | ||||| |||||||||||||  | |||| ||| |||||||||||||| |||||    
T  48600787 tgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagt 48600708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 50521350 - 50521291
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaat-aaagtagtctcaagcaacaacaa 378  Q
    |||||||| || |||||||||| ||||||||||| | ||||||||||||| |||||||||    
T  50521350 agatgtgtggagtaaaggaagtggtaatcaatgagtaaaagtagtctcaaacaacaacaa 50521291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 775584 - 775706
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||| ||| |||||| ||    
T  775584 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacatcaagattgttgac 775683  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    ||| |||| | ||| ||||||||    
T  775684 ccaattcggtccaatatgaccta 775706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 672 - 706
Target Start/End: Complemental strand, 6354296 - 6354262
Alignment:
Q  672 ctctaatgagatctcactacccaaggtgtttacaa 706  Q
    |||||||||||||||||||||||| ||||||||||    
T  6354296 ctctaatgagatctcactacccaaagtgtttacaa 6354262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 610
Target Start/End: Complemental strand, 918514 - 918433
Alignment:
Q  529 cactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccatt 610  Q
    ||||||||||||| ||||||||| || ||||||||||||| | ||    |||||||||||||||   ||||||||| |||||    
T  918514 cactatgataagagtgatacaaagatattacaagaaattatcttacaaactcacaaagaacaaaccataatttctacccatt 918433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 699
Target Start/End: Original strand, 2210668 - 2210697
Alignment:
Q  670 ttctctaatgagatctcactacccaaggtg 699  Q
    ||||||||||||||||||||||||||||||    
T  2210668 ttctctaatgagatctcactacccaaggtg 2210697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 438
Target Start/End: Complemental strand, 9024059 - 9023956
Alignment:
Q  338 aagtagtaatcaatgaataaagtagtctcaagcaa---caacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaaga 434  Q
    |||| |||||||||| ||||||||| | |||||||   ||||||||| ||||| |||||||| |  ||||||| || |  ||||||||| |||| |||||    
T  9024059 aagtggtaatcaatggataaagtagccccaagcaataacaacaaacatacctaaatctaagtgtatagcaacaccacaagcataatcaatgcaataaaga 9023960  T
Q  435 taag 438  Q
    ||||    
T  9023959 taag 9023956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 703
Target Start/End: Original strand, 15864772 - 15864805
Alignment:
Q  670 ttctctaatgagatctcactacccaaggtgttta 703  Q
    ||||||||||||||||||||||||||| ||||||    
T  15864772 ttctctaatgagatctcactacccaagatgttta 15864805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 281 - 568
Target Start/End: Complemental strand, 16265 - 15983
Alignment:
Q  281 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaac 380  Q
    |||||||||||  |||||||||| | ||||||| ||||||||||||| ||  ||||||||||||||||||||     |||||| |||||||||||||||     
T  16265 tgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatg-----agtagtttcaagcaacaacaaat 16171  T
Q  381 agacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagat-aagcaagaagggaag-gagacaacacaccaacattgtttaccca 478  Q
      |||||||||||||| |||| ||||| || | ||||| |||||||||||||||| |||  |||| |||||  | |||||||||||| ||| ||||||||    
T  16170 ttacctagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataaagagagaaaggaagaaaaacaacacaccaatattatttaccca 16071  T
Q  479 gttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    ||||| | |||||| | ||||| |||||  ||||||| | | |||  || ||||||||||||| | ||||||| ||||||||||||||||    
T  16070 gttcggtccaaaataatctactatggag--aagagaacaacactctaatccactatgataagagttatacaaagatgttacaagaaatta 15983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 281 - 706
Target Start/End: Original strand, 37781673 - 37782108
Alignment:
Q  281 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaaca--- 377  Q
    |||||||||||||||| |||||| |||  |||| |||||||| |||| ||  ||| |||||||| || ||||| |||||||   |||| ||||||||       
T  37781673 tgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagtagtcattaatgagtaaagtatcatcaatcaacaacatca 37781772  T
Q  378 ---aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgttta 474  Q
       || |||||||||||||||| |||||||||| || |  |||| ||||||||||||||||||| || ||  |||| | |||||| ||||| ||||||||    
T  37781773 acaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaataatagaagaaaacaacaaaccaatattgttta 37781872  T
Q  475 cccagttcgatgcaaa-atgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacata 573  Q
    ||||||||| |  ||| ||||||||||| ||||   ||||| || |||||| || |||||| |||| | ||||||||| | |||||||||||||| | ||    
T  37781873 cccagttcggtttaaatatgacctacttcggag---agagagtaactctccaatccactataataaaagtgatacaaagaggttacaagaaattagctta 37781969  T
Q  574 ttcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactc--acatg-atccaaagag-aaacactaaaggaga-ttttttatt 668  Q
        ||||||||||||||||  ||||||||| ||||| || ||||||||  |||||  | ||| |||  ||||| |||||||||| |||| ||||| |||    
T  37781970 aaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagagactttttgatt 37782069  T
Q  669 ctt-ctctaatgagatctcactacccaaggtgtttacaa 706  Q
    ||| |  |||||| |||||||||||||||||||||||||    
T  37782070 cttccaataatgaaatctcactacccaaggtgtttacaa 37782108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 415 - 706
Target Start/End: Complemental strand, 34670810 - 34670517
Alignment:
Q  415 cataatcaaagcaacaaagataagcaagaaggg--aaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 512  Q
    |||| ||||||||||||||||||| || || ||  ||| | ||||||| |  |||||||||| |||||||| | |||||||||||||| || |||| | |    
T  34670810 catattcaaagcaacaaagataagaaataaagggaaagaaaacaacacgcatacattgtttatccagttcggtccaaaatgacctactatgaaggagata 34670711  T
Q  513 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattat 612  Q
    | |  |||||| ||| ||||||||||||   | |||||| | |||||||||||||| | || | |||||||||||||||||  ||||||||||||||| |    
T  34670710 gca--gctctctgatccactatgataag---ggtacaaagaggttacaagaaattagcttaatagctcacaaagaacaaatcataatttctatccatttt 34670616  T
Q  613 ttaagtcacccgcactcac-atg-atccaaagag-aaacactaaaggaga-ttttttattctt-ctctaatgagatctcactacccaaggtgtttacaa 706  Q
    | ||||||| | ||||||| ||| |||| ||||| ||||||||||| | | ||||  || ||| ||||||||||||||||||||||||| || ||||||    
T  34670615 tcaagtcactcacactcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 34670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 281 - 604
Target Start/End: Complemental strand, 873809 - 873477
Alignment:
Q  281 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaag----------- 369  Q
    ||||||||||| |||| |||||| | ||||||| ||||||||||| |||| ||| |||||| |||||||||||  ||||  |||| |||               
T  873809 tgttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaagaggtcttaagaaacaaaaaca 873710  T
Q  370 -caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacat 468  Q
     ||||||||||| ||| || |||||||| |||| ||||| || | ||||| ||||| |||| |||||||| || |||  ||||| |||||||||||| ||    
T  873709 acaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaaacaagataaggaaacaacacaccaatat 873610  T
Q  469 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    | ||||| ||||||| |   |||| || ||| || ||   ||||||  | ||||||||| ||||||||| |||||||||| |||| ||||||||||||||    
T  873609 tatttactcagttcggttttaaattacatacattaga---aagagagcaactctccgatccactatgattagaatgataccaataggttacaagaaatta 873513  T
Q  569 acatattcgctcacaaagaacaaattctaatttcta 604  Q
    || ||   |||| |||| ||||||| ||||||||||    
T  873512 acttaaaagctcgcaaataacaaatcctaatttcta 873477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 298 - 437
Target Start/End: Original strand, 4956015 - 4956157
Alignment:
Q  298 aataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaac---aacaaacagacctagatctaa 394  Q
    |||||| ||||||||| ||||||||  ||| ||  |||||||||| ||||||||||  || | || ||||||||||   ||||||| || |||||| |||    
T  4956015 aataatcataccaatataacttagacatgtggagcaaaggaagtaataatcaatgagcaatgcagcctcaagcaacaacaacaaacggatctagatttaa 4956114  T
Q  395 gtatgaagcaacatcagacacataatcaaagcaacaaagataa 437  Q
    || |||||||||| || | ||||||||||||||||| ||||||    
T  4956115 gtgtgaagcaacaccacaaacataatcaaagcaacacagataa 4956157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 454 - 622
Target Start/End: Complemental strand, 8114843 - 8114679
Alignment:
Q  454 acaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaata 553  Q
    |||||||||||| |||||||||| | |||| |  | ||||| ||||| | |||   |||||| | |||||| || ||||||||||||||||||| |||||    
T  8114843 acaacacaccaatattgtttacctaattcggtctataatgatctactatcgag---agagaacaactctccaatccactatgataagaatgatataaata 8114747  T
Q  554 tgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacc 622  Q
     ||||||||||| | || |||   |||||||||||||||  ||||||| |||||||| || ||||||||    
T  8114746 ggttacaagaaa-tcacttataatctcacaaagaacaaaccctaatttgtatccatttttcaagtcacc 8114679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 320 - 498
Target Start/End: Complemental strand, 25862269 - 25862085
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 413  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  25862269 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 25862171  T
Q  414 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 498  Q
     |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| || ||||||| | ||| ||||||||    
T  25862170 gcataatcaaagcaataaagataagcaatgaaagaaaggaataaacacaccaagattgttgactcagttcggtccaatatgaccta 25862085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 498
Target Start/End: Original strand, 39245899 - 39246028
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 468  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| ||    
T  39245899 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaggcataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacaccaagat 39245998  T
Q  469 tgtttacccagttcgatgcaaaatgaccta 498  Q
    |||| |||||||||| | ||| ||||||||    
T  39245999 tgttgacccagttcggtccaatatgaccta 39246028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 38152623 - 38152517
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| |||||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  38152623 aaacagacctagatctaagtgtatagcaacaccacaagcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 38152525  T
Q  476 ccagttcg 483  Q
    ||||||||    
T  38152524 ccagttcg 38152517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 54867096 - 54867218
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    |||||||| ||||||||||| |  ||||||| || |  ||||||||||| || |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  54867096 aaacagacatagatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 54867195  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    |||||||| | ||| ||||||||    
T  54867196 ccagttcggtccaatatgaccta 54867218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 39593789 - 39593830
Alignment:
Q  527 ttcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  39593789 ttcactatgataagagtgatacaaataagttacaagaaatta 39593830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 498
Target Start/End: Original strand, 10047242 - 10047413
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 426  Q
    ||||||||| |||||||||| ||||||| ||||| |||||| |||||     | |||| ||||||||||| |  ||||||| || |  ||||||||||||    
T  10047242 aaaggaagtggtaatcaatggataaagt-gtctccaagcaataacaacaaaaatagacatagatctaagtgtagagcaacaccacaagcataatcaaagc 10047340  T
Q  427 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 498  Q
    || |||||||| ||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  10047341 aataaagataaacaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 10047413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 504
Target Start/End: Original strand, 5147590 - 5147717
Alignment:
Q  378 aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacc 476  Q
    |||||||||| |||||||| |  ||||||| || | ||||||||||| ||| | |||||||||| ||| | |||||   |||||||| | |||||| |||    
T  5147590 aacagacctaaatctaagtgtagagcaacaccacaaacataatcaaaacaatagagataagcaatgaaagaaaggaacaaacacaccgagattgttgacc 5147689  T
Q  477 cagttcgatgcaaaatgacctactttgg 504  Q
    ||||||| | ||| |||||||| |||||    
T  5147690 cagttcggtccaatatgacctaatttgg 5147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 672 - 706
Target Start/End: Complemental strand, 873404 - 873370
Alignment:
Q  672 ctctaatgagatctcactacccaaggtgtttacaa 706  Q
    |||||||||||||||||||| ||||||||||||||    
T  873404 ctctaatgagatctcactactcaaggtgtttacaa 873370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 621
Target Start/End: Complemental strand, 18912411 - 18912305
Alignment:
Q  515 atagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattattt 614  Q
    |||||||||| || ||||||||||||| ||||||||| | | ||||||||||||   ||    |||||||||||||||  |||| || |||||||| ||     
T  18912411 atagctctccaatccactatgataagagtgatacaaaaaggatacaagaaattagtttacaaactcacaaagaacaaaccctaaattatatccatttttc 18912312  T
Q  615 aagtcac 621  Q
    |||||||    
T  18912311 aagtcac 18912305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 42234574 - 42234512
Alignment:
Q  337 gaagtagtaatcaatgaataaagtagtctcaagcaacaacaaacagacctagatctaagtatgaag 402  Q
    ||||||||||||||  | ||||||||| |||||||||||| |||| |||||||||||||| |||||    
T  42234574 gaagtagtaatcaa--attaaagtagtttcaagcaacaac-aacatacctagatctaagtgtgaag 42234512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 568
Target Start/End: Original strand, 4956232 - 4956281
Alignment:
Q  519 ctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    |||||| || ||||||||||||||||||| ||| | ||||||||||||||    
T  4956232 ctctccaatccactatgataagaatgataaaaagaggttacaagaaatta 4956281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 478
Target Start/End: Complemental strand, 42599762 - 42599657
Alignment:
Q  374 aacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtt 472  Q
    |||||||| |||||||||||| | |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| ||||||    
T  42599762 aacaaacaaacctagatctaaatgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgtt 42599663  T
Q  473 taccca 478  Q
     |||||    
T  42599662 gaccca 42599657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 372 - 706
Target Start/End: Complemental strand, 28770964 - 28770626
Alignment:
Q  372 acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaa-ggagacaacacaccaacattg 470  Q
    |||||||| |||||||||||||||| |||||||||| || |  |||||||||||||| ||| ||||  |||||| ||| ||| |||| ||||||| |||     
T  28770964 acaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagagaaaggaaacaagacaccaatattt 28770865  T
Q  471 tttacccagttcgatgcaaaa-tgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaa 569  Q
    |||||| | | || |  |||| ||||||||| ||||||| |||| |  |||||||||| | ||| ||||||||||||||||| || |||||||||||||     
T  28770864 tttaccta-tacggtctaaaaatgacctactctggaggatagagca--gctctccgatcctctacgataagaatgatacaaagatattacaagaaattag 28770768  T
Q  570 catattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcac-atg-atccaaagag-aaacactaaaggaga-tttttt 665  Q
    | ||   |||||||||||||||| ||||||||||| ||||| || ||||||  | ||||| | ||| |||| ||||| ||||||||||||| | ||||||    
T  28770767 cttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaacactaaaggaaactttttt 28770668  T
Q  666 attcttc-tctaatgagatctcactacccaaggtgtttacaa 706  Q
    || ||||  |||||||||||||||||||||||||||||||||    
T  28770667 atccttcagctaatgagatctcactacccaaggtgtttacaa 28770626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 280 - 568
Target Start/End: Complemental strand, 16388760 - 16388465
Alignment:
Q  280 atgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca-------- 371  Q
    ||||||||||||||||| |||||| | | ||||| ||||||||||||| ||  |||   ||||||||||||||| |||||||||||||||||            
T  16388760 atgttgtgaattcaaacaaataatcacatcaata-aacttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaagcagcagcaac 16388662  T
Q  372 -acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattg 470  Q
     ||||||||||||||||||| || || ||||||||||  | |  ||||  |||||||| |||||||||  |||| ||| | | |||||||||||| ||||    
T  16388661 aacaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaataaagataagagagaaaggaggaaaacaacacaccaatattg 16388562  T
Q  471 tttacccagttcgatgc-aaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    ||||||||||| | | | ||||||||||||| | ||||  |||||  ||||||||  | |||| ||||||||  |||| ||| | ||||||||||||||    
T  16388561 tttacccagtttggtccaaaaatgacctactctagagg--agagagcagctctcctttccactttgataagagagatagaaagaggttacaagaaatta 16388465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 370 - 629
Target Start/End: Complemental strand, 2869886 - 2869626
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaag-aagggaaggagacaa-cacaccaaca 467  Q
    |||||||||| ||||||| |||||||| |  ||||||| || |  |||| ||||||||||||||||||||||  || |||||   |||| |||||||| |    
T  2869886 caacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagcaacaaagataagcaaataaaggaagagaacaaacacaccaata 2869787  T
Q  468 ttgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatt 567  Q
    |||||||||||||||| | ||| |||||||||| |  |||  ||||| ||||||||| || ||||| ||| | | |||||||||   |||||||||||||    
T  2869786 ttgtttacccagttcggtccaatatgacctactct--aggggagagagtagctctccaatccactaagatgaaagtgatacaaaggagttacaagaaatt 2869689  T
Q  568 aacatattcgctcacaaagaac-aaattctaatttctatccattatttaagtcacccgcactc 629  Q
    | | ||   ||||||||||||| |||  |||||||||| ||||| || ||||||||| |||||    
T  2869688 agcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactc 2869626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 370 - 513
Target Start/End: Original strand, 3277908 - 3278051
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacatt 469  Q
    |||||||||| ||| |||||||||||| ||||||||||  | | ||||| ||||||||| ||||||||| || ||| || ||| | |||||| |||||||    
T  3277908 caacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataagaaataagagagggaaaaaacacatcaacatt 3278007  T
Q  470 gtttacccagttcgatgcaaaatgacctactttggaggaaagag 513  Q
    |||||| || |||  | |||||||||||||| ||||||| ||||    
T  3278008 gtttactcatttccgtccaaaatgacctactatggaggagagag 3278051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 281 - 378
Target Start/End: Original strand, 16388259 - 16388355
Alignment:
Q  281 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 378  Q
    |||||||||||| ||| |||||| | ||| ||| ||||||||||||| ||  |||| |||||||||||||||||||||||||||||||||| ||||||    
T  16388259 tgttgtgaattcgaacaaataatcacaccgata-aacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaa 16388355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 320 - 498
Target Start/End: Complemental strand, 33528868 - 33528684
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaac-----aaacagacctagatctaagtatgaagcaacatcagaca 414  Q
    |||||||| ||  ||||||||| |||||||||| |||||||   | |||||||||||     |||||||||||||||||| | |  ||||||| || |      
T  33528868 agatgtgtggagcaaaggaagtggtaatcaatggataaagtgtccccaagcaacaacaacaaaaacagacctagatctaaatgtagagcaacaccacaag 33528769  T
Q  415 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 498  Q
    |||||||||||||| |||||||| ||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  33528768 cataatcaaagcaataaagataaacaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 33528684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 537
Target Start/End: Complemental strand, 8390341 - 8390176
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 468  Q
    |||||| || ||||||||||||||||| |  ||||||| || |  ||||||||||||| ||||||||||| | ||| | || ||   |||||||||| ||    
T  8390341 caacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaagca-caaagataagcgatgaaagaaatgaacaaacacaccaaaat 8390243  T
Q  469 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgat 537  Q
    |||| |||||||||| | |||||||||||| ||||| ||  |||||  |||||||| || |||||||||    
T  8390242 tgttgacccagttcggtccaaaatgacctaatttggggg--agagagcagctctccaatccactatgat 8390176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 15903876 - 15903824
Alignment:
Q  577 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactc 629  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||| |||||    
T  15903876 gctcacaaagaacaaattctaatttctacccatttttcaagtcacccacactc 15903824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 630
Target Start/End: Complemental strand, 18674447 - 18674334
Alignment:
Q  517 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 616  Q
    |||||||||||  ||||||| |||| |||||| ||   ||||||||||||||   ||   ||||||||||||||||   ||||||||||||||| || ||    
T  18674447 agctctccgatctactatgacaagagtgataccaaggggttacaagaaattagtttaaaagctcacaaagaacaaaccataatttctatccatttttcaa 18674348  T
Q  617 gtcacccgcactca 630  Q
    ||||||| ||||||    
T  18674347 gtcacccacactca 18674334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 498
Target Start/End: Original strand, 20522070 - 20522254
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 413  Q
    |||||||| ||  ||||||||| |||||||||| ||||||| ||||| |||||| |||||     | |||| ||||||||||| |  ||||||| || |     
T  20522070 agatgtgtggagaaaaggaagtggtaatcaatggataaagt-gtctccaagcaaaaacaacaaaaaaagacatagatctaagtgtagagcaacaccacaa 20522168  T
Q  414 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 498  Q
     |||||||||||||| ||||||||| || ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  20522169 gcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 20522254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 482
Target Start/End: Original strand, 8039923 - 8040078
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 426  Q
    ||||||||| |||||||||  ||||||| |||| |||||||||||||     ||||||||| |||||||| |  ||||||| || |  ||||||||||||    
T  8039923 aaaggaagtggtaatcaatagataaagt-gtcttcaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagc 8040021  T
Q  427 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttc 482  Q
    || |||||||||||| |||||  |||| | || ||| ||| |||||| |||||||||    
T  8040022 aataaagataagcaatgaaggagaggaaaaaatacatcaagattgttgacccagttc 8040078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 370 - 568
Target Start/End: Original strand, 13569234 - 13569430
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 468  Q
    |||||| |||||| | |||||||||||||  || |||| || |  |||||||||||| |||||||||| ||| ||| | |||||   |||||||||| ||    
T  13569234 caacaaaaaacaggcttagatctaagtatagagaaacaccacaagcataatcaaagc-acaaagataatcaatgaaagaaaggaataaacacaccaaaat 13569332  T
Q  469 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    |||| |||||||||| | ||| |||||||| | ||| ||  |||||  |||||||| || ||||||||| | | || ||||||   ||||||||||||||    
T  13569333 tgttgacccagttcggtccaatatgacctaatctggggg--agagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaatta 13569430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 441
Target Start/End: Original strand, 31055892 - 31056018
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 413  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  31055892 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 31055990  T
Q  414 acataatcaaagcaacaaagataagcaa 441  Q
     |||||||||||||| ||||||||||||    
T  31055991 gcataatcaaagcaataaagataagcaa 31056018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 513
Target Start/End: Original strand, 33118048 - 33118185
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    ||||||||||| |||||||| |  ||||||| || |  ||||||||||| || |||||||||||| ||| | |||||   |||||||||| ||||||  |    
T  33118048 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttggc 33118147  T
Q  476 ccagttcgatgcaaaatgacctactttggaggaaagag 513  Q
     ||||||| | ||| |||||||| ||||| ||| ||||    
T  33118148 tcagttcggtccaatatgacctaatttgggggagagag 33118185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 568
Target Start/End: Original strand, 34388771 - 34388960
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacattgtttac 475  Q
    |||||||||||||||||||| |  ||||||| || |  || ||||||||| |||||||||| | ||||| | |||||   |||||||| | |||||| ||    
T  34388771 aaacagacctagatctaagtgtagagcaacaccacaagcaaaatcaaagc-acaaagataaacaaagaaagaaaggaacaaacacaccgagattgttgac 34388869  T
Q  476 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    ||| |||| | ||| |||||||| | ||| ||  ||||| ||||||||| || ||||||||| | | || ||||||   ||||||||||||||    
T  34388870 ccaattcggtccaatatgacctaatctggggg--agagagtagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaatta 34388960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 6e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 320 - 568
Target Start/End: Complemental strand, 33721804 - 33721554
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaaca---acaaacagacctagatctaagtatgaagcaacatcagacaca 416  Q
    |||||||| ||  |||||||||||||||| |||| ||||||||| ||||||||||   |||||||  ||||||||||||| |||| || || || | |||    
T  33721804 agatgtgtggaacaaaggaagtagtaatcgatgagtaaagtagtttcaagcaacaacaacaaacatccctagatctaagtgtgaaacatcaccacaaaca 33721705  T
Q  417 taatcaaagcaacaaagataagcaagaagggaag-gagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaa 515  Q
    || |||||||||||||||||||  |||| |||||  | |||||||||||| |||  ||| ||||||   | |||||||| ||||| ||  || |||||||    
T  33721704 tattcaaagcaacaaagataagagagaaaggaagaaaaacaacacaccaatattacttatccagtttagtccaaaatgatctactatg--gggaagagaa 33721607  T
Q  516 tagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
     | ||||| ||| ||||||||||||||| ||||||| | ||||||||||||||    
T  33721606 caactctctgatccactatgataagaattatacaaagaggttacaagaaatta 33721554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 308 - 632
Target Start/End: Original strand, 98998 - 99321
Alignment:
Q  308 ccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaa-cagacctagatctaagtatgaagcaac 406  Q
    |||||| |||||| | |||| || ||||||||||||||||||||||  |||||||||| ||||||||||||| || || || ||| |||| | ||| |||    
T  98998 ccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtcttaagcaacaacaaaacaaacatatatccaagtgtaaagaaac 99097  T
Q  407 atcagacacataatcaaagcaacaaagataagcaagaagggaaggag-acaacacaccaacattgtttacccagttcgatgcaaaatgacctactttgga 505  Q
    | |  | ||||| ||||||||||||||| ||  |||| | ||||||| |||||| || || ||||||||| | ||||  ||||||||||| |||| |  |    
T  99098 accgcaaacatactcaaagcaacaaagacaataaagaggagaaggagaacaacaaacaaatattgtttacacggttcagtgcaaaatgacatactctcaa 99197  T
Q  506 ggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctat 605  Q
    |  |||| | || || || ||| || |||||| |||||||||| | || |||||||||||||| | ||   ||||||| |||||||| | |||||||||     
T  99198 g--aagatagtaactttctgatccattatgatgagaatgatacgattaagttacaagaaattagcttagaagctcacagagaacaaactttaatttctac 99295  T
Q  606 ccattatttaagtcacccgcactcaca 632  Q
    ||||| ||||||| || | ||||||||    
T  99296 ccatt-tttaagttactcacactcaca 99321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 307 - 632
Target Start/End: Complemental strand, 1115361 - 1115035
Alignment:
Q  307 accaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa---acagacctagatctaagtatgaagc 403  Q
    ||||||| ||||||||| | | || |||| |||||||||||||||||  |||||||  ||||||||||||||   | |||| |||||||  || |||||     
T  1115361 accaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagtagcttcaagcaacaacaacaaatagacatagatctctgtgtgaagt 1115262  T
Q  404 aacatcagacacataatcaaagcaacaaagataagcaagaagggaa-ggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctacttt 502  Q
    |||| || |  | || | ||| ||||||||||| |  ||| | ||| ||| |||||||||||| |||||||||| | |||| | || |||||  |||| |    
T  1115261 aacaccacagtcttatttaaaccaacaaagatatgacagatgagaaaggaaacaacacaccaatattgtttacctaattcggtccataatgatttactat 1115162  T
Q  503 ggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttc 602  Q
       |   |||||  || ||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||   ||||| ||| ||||||  ||||||||    
T  1115161 ctgg---agagagcagatctccaatccactatgataagaatgatacaaataggttacaagaaatcaacttaaaagctcaaaaataacaaaccctaatttc 1115065  T
Q  603 tatccattatttaagtcacccgcactcaca 632  Q
    |||||||| || ||||||||| ||||||||    
T  1115064 tatccatttttcaagtcacccacactcaca 1115035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 320 - 568
Target Start/End: Complemental strand, 10077412 - 10077160
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 413  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  10077412 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 10077314  T
Q  414 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 512  Q
     |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||||| |||| | ||| |||||||| | ||| ||  |||    
T  10077313 gcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccaattcggtccaatatgacctaatctggggg--aga 10077216  T
Q  513 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    ||  ||| |||| || ||||||||| | | || |||||| | ||||||||||||||    
T  10077215 gagcagccctccaatccactatgatgaaagtgttacaaaaaagttacaagaaatta 10077160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 370 - 496
Target Start/End: Original strand, 22963605 - 22963732
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacat 468  Q
    |||||| |||||||||||||||||||| |  ||||||| || |  |||||||||||||| | |||||||| | ||| | |||||   |||||||||| ||    
T  22963605 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagctatgaaagaaaggaacaaacacaccaagat 22963704  T
Q  469 tgtttacccagttcgatgcaaaatgacc 496  Q
    |||| |||||||||| ||||| ||||||    
T  22963705 tgttgacccagttcggtgcaatatgacc 22963732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 370 - 496
Target Start/End: Complemental strand, 23824788 - 23824661
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacat 468  Q
    |||||| |||||||||||||||||||| |  ||||||| || |  |||||||||||||| | |||||||| | ||| | |||||   |||||||||| ||    
T  23824788 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagctatgaaagaaaggaacaaacacaccaagat 23824689  T
Q  469 tgtttacccagttcgatgcaaaatgacc 496  Q
    |||| |||||||||| ||||| ||||||    
T  23824688 tgttgacccagttcggtgcaatatgacc 23824661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 5017653 - 5017547
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| |||||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  5017653 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 5017555  T
Q  476 ccagttcg 483  Q
    ||||||||    
T  5017554 ccagttcg 5017547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 441
Target Start/End: Original strand, 31979363 - 31979489
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 413  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| |||| |||||||||||||     ||||||||| |||||||| |  |||||||||| |     
T  31979363 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtcttcaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacatcacaa 31979461  T
Q  414 acataatcaaagcaacaaagataagcaa 441  Q
     |||||||||||||| ||||||||||||    
T  31979462 gcataatcaaagcaataaagataagcaa 31979489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 31077203 - 31077146
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaaca 377  Q
    |||||||||||  ||||||| ||||||||||||| |||||||| ||||||||| ||||    
T  31077203 agatgtgtagagaaaaggaaatagtaatcaatgagtaaagtagcctcaagcaataaca 31077146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 632
Target Start/End: Complemental strand, 30518172 - 30518059
Alignment:
Q  519 ctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagt 618  Q
    ||||| ||| ||||||||||||| ||||||||| | |||||| |||| |||| ||   | ||||||||||||||   ||||||||| | ||| || ||||    
T  30518172 ctctctgatccactatgataagagtgatacaaagaggttacatgaaactaacttaaaagttcacaaagaacaaaccttaatttctacctatttttcaagt 30518073  T
Q  619 cacccgcactcaca 632  Q
     |||| ||||||||    
T  30518072 tacccacactcaca 30518059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 337 - 620
Target Start/End: Original strand, 5611009 - 5611295
Alignment:
Q  337 gaagtagtaatcaatgaataaagtagtctcaagcaacaa------caaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 430  Q
    ||||||||||||||||| ||||||||||| |||||||||      |||||| |||||||||||||  |||| ||||| || |   ||| |||||||||||    
T  5611009 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaaca 5611108  T
Q  431 aagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattca 530  Q
    |||||||| ||||||||||| | |||||||||||| |||||||| | | ||||   |||||| || |||| ||||||||   ||  | || || ||| ||    
T  5611109 aagataagaaagaagggaagaaaacaacacaccaatattgtttatcaaattcggcccaaaataacatactatggaggaa--tgaccaactttctgatcca 5611206  T
Q  531 ctatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtca 620  Q
    ||||||||| | ||||||||| |  ||| || |||||| | ||   | |||||||||||||| ||| ||||||||||||| |||||||||    
T  5611207 ctatgataaaactgatacaaagagattaaaaaaaattagcttaaaagttcacaaagaacaaaatcttatttctatccatt-tttaagtca 5611295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 315 - 448
Target Start/End: Original strand, 34842449 - 34842587
Alignment:
Q  315 aacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaag------caacaacaaacagacctagatctaagtatgaagcaacat 408  Q
    ||||||||||||| || ||||||||||||||||||| || |||||||| ||||||      |||||| ||||| |||||||||||||| ||||||||||     
T  34842449 aacttagatgtgtggagtaaaggaagtagtaatcaa-gagtaaagtagcctcaagcagcaacaacaataaacaaacctagatctaagtgtgaagcaacac 34842547  T
Q  409 cagacacataatcaaagcaacaaagataagcaagaaggga 448  Q
    || |  ||||  | |||||||||||||||| |||| ||||    
T  34842548 cacaagcatatccgaagcaacaaagataagaaagatggga 34842587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 333 - 472
Target Start/End: Original strand, 3880166 - 3880307
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaaa--cagacctagatctaagtatgaagcaacatcagacacataatcaaagcaac 429  Q
    ||||||||| |||||||||  ||||||| |||| ||| ||||||||||  |||||||| |||||||| | |||||||| || |  ||||||||||||||     
T  3880166 aaaggaagtggtaatcaatagataaagt-gtcttcaatcaacaacaaaaacagacctaaatctaagtgtaaagcaacaccacaagcataatcaaagcaat 3880264  T
Q  430 aaagataagcaa-gaagggaaggagacaacacaccaacattgtt 472  Q
    |||||||||||| ||| | ||||| |||||||||||| ||||||    
T  3880265 aaagataagcaatgaaagaaagga-acaacacaccaagattgtt 3880307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 333 - 498
Target Start/End: Complemental strand, 17004193 - 17004023
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 426  Q
    ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| | |||||||| || |  ||||||||||||    
T  17004193 aaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgt-aagcaacaccacaagcataatcaaagc 17004096  T
Q  427 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 498  Q
    || |||||||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  17004095 aaaaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 17004023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 2630087 - 2630132
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 378  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  2630087 aaaggaagtagtaagcaatgaataaagtagcctcaagcaacaacaa 2630132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 28537489 - 28537527
Alignment:
Q  340 gtagtaatcaatgaataaagtagtctcaagcaacaacaa 378  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28537489 gtagtaatcaatgagtaaagtagtctcaagcaacaacaa 28537527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 281 - 378
Target Start/End: Original strand, 30899668 - 30899765
Alignment:
Q  281 tgttgtgaattcaaactaataata-ataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 378  Q
    |||||||||||||||| ||||| | ||| ||||| ||||||||||||| ||   || ||| |||||||||||||  ||||||| |||||||||||||||    
T  30899668 tgttgtgaattcaaac-aataaaacatatcaataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaa 30899765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 604
Target Start/End: Original strand, 30899918 - 30900005
Alignment:
Q  517 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttcta 604  Q
    |||||||||||  | ||||| |||| ||||||||| | |||||||||||||| | ||   |||||||||||||||| |||| ||||||    
T  30899918 agctctccgatctattatgagaagagtgatacaaagaggttacaagaaattagcctacaagctcacaaagaacaaactctattttcta 30900005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 498
Target Start/End: Complemental strand, 42127656 - 42127473
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagaca 414  Q
    |||||||| ||  |||| |||| |||||||||| ||||||| ||||| ||||||||||||    |||||| || |||||| | |  ||||||| || |      
T  42127656 agatgtgtggagcaaagaaagtggtaatcaatggataaagt-gtctccaagcaacaacaacaaaacagacttaaatctaattgtagagcaacaccacaag 42127558  T
Q  415 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 498  Q
    |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| |||||| ||||||||||||  || ||||||||    
T  42127557 cataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcgatctaatatgaccta 42127473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 498
Target Start/End: Complemental strand, 24553691 - 24553569
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    ||||||||||| |||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| |     
T  24553691 aaacagacctaaatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgat 24553592  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    |||||||| | ||| ||||||||    
T  24553591 ccagttcggtccaatatgaccta 24553569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 337 - 620
Target Start/End: Original strand, 21156296 - 21156582
Alignment:
Q  337 gaagtagtaatcaatgaataaagtagtctcaagcaacaa------caaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 430  Q
    ||||||||||||||||| ||||||||||| |||||||||      |||||| |||||||||||||  |||| ||||| || |   ||| |||||||||||    
T  21156296 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaaca 21156395  T
Q  431 aagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattca 530  Q
    |||||||| ||||||||||| | |||||||||||| |||||||| | | ||||   |||||| || |||| ||||||||   ||  | || || ||| ||    
T  21156396 aagataagaaagaagggaagaaaacaacacaccaatattgtttatcaaattcggcccaaaataacatactatggaggaa--tgaccaactttctgatcca 21156493  T
Q  531 ctatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtca 620  Q
    ||||||||| | ||||||||| |  ||| || |||||| | ||   | |||||||||||||| ||| ||||||||||||| |||||||||    
T  21156494 ctatgataaaactgatacaaagagattaaaaaaaattagcttaaaagttcacaaagaacaaaatcttatttctatccatt-tttaagtca 21156582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 281 - 632
Target Start/End: Original strand, 25516791 - 25517148
Alignment:
Q  281 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa-- 378  Q
    |||||||||||  ||||  |||| ||||||||| | |||   ||||| || ||||| |||||||||||||| | ||||||||||||||  ||||||||      
T  25516791 tgttgtgaatttgaactggtaatcataccaataaatctttattgtgttgagtaaagaaagtagtaatcaataagtaaagtagtctcaaataacaacaaca 25516890  T
Q  379 ----acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggaga-caacacaccaacattgttt 473  Q
        | |||| |||||| |||| |||| ||||| || | ||||| | |||| ||||| |||||| |||||| || ||| | ||||||||||| | |||||    
T  25516891 aaaaatagacttagatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaaggataagaaagaagagagggaaaacaacacaccaatagtgttt 25516990  T
Q  474 acccagttcgat-gcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacat 572  Q
    ||||||||||||   ||||||| | ||||||   || |||||| | |||||  ||| | | |||||||||||||| |  || |||| ||||||||| | |    
T  25516991 acccagttcgatctaaaaatgatcaactttg--agagagagaacaactctctaatttattgtgataagaatgataaatttaggttataagaaattagctt 25517088  T
Q  573 attcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcaca 632  Q
    |   ||||||||||||||||  ||||||||||   ||| || ||||||||| ||||||||    
T  25517089 aaaagctcacaaagaacaaaccctaatttctacttatttttcaagtcacccacactcaca 25517148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 333 - 604
Target Start/End: Original strand, 29100033 - 29100298
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa---acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaac 429  Q
    ||||||||||||||||||||| || | |||||||||||||||||||   || ||  ||||||||| | ||||| |||| || | ||||| |||||||||     
T  29100033 aaaggaagtagtaatcaatgagtagaatagtctcaagcaacaacaacaaactgagatagatctaactgtgaagaaacaccacaaacatattcaaagcaag 29100132  T
Q  430 aaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattc 529  Q
    |||||  || |||||         |||||||||||| ||||||||||||||||| | |||||| ||| ||| |  ||| ||||||  ||||||||  | |    
T  29100133 aaagaagagaaagaaa--------acaacacaccaatattgtttacccagttcggtccaaaattacccactat--agggaagagagcagctctccattcc 29100222  T
Q  530 actatgat-aagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttcta 604  Q
    |||||||| |||| ||||||||| | |||| ||||||||| | ||    |||||||||||||||  ||||||||||    
T  29100223 actatgataaagagtgatacaaagaggttataagaaattagcttaaaaactcacaaagaacaaaccctaatttcta 29100298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 47924106 - 47924028
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa--cagacctagatctaagt 396  Q
    |||||||| || |||||||||| |||||||||| ||||||| ||||| |||||||||||||  |||||||||||||||||    
T  47924106 agatgtgtggagtaaaggaagtggtaatcaatggataaagt-gtctccaagcaacaacaaaaacagacctagatctaagt 47924028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 568
Target Start/End: Complemental strand, 8370724 - 8370472
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 413  Q
    |||||||| || |||||||||  ||||||||||  |||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  8370724 agatgtgtggagtaaaggaagaggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtgtagagcaacaccacaa 8370626  T
Q  414 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacacc--aacattgtttacccagttcgatgcaaaatgacctactttggaggaaa 510  Q
     |||||||||||| |||||||||||||| ||| | |||||   ||||||||  || |||||| |||||||||| | ||| |||||||| | ||| ||  |    
T  8370625 gcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaaaagattgttgacccagttcggtccaatatgacctaatctggggg--a 8370529  T
Q  511 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 568  Q
    ||||  |||||||| || ||||||||| | | || |||||| | ||||||||||||||    
T  8370528 gagagcagctctccaatccactatgatgaaagtgttacaaaga-gttacaagaaatta 8370472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 629
Target Start/End: Complemental strand, 4387065 - 4386851
Alignment:
Q  415 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaaga 512  Q
    |||||||||| ||| |||||||||||| ||| | |||||   |||||| |||  |||||||||||||||   | ||  |||||||||| ||| ||| |||    
T  4387065 cataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacatcaaagattgtttacccagtttagttcagtatgacctactctgggggagaga 4386966  T
Q  513 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattat 612  Q
    | |  ||||||| || || || ||||| | ||||||||||  |||||||||||||| | ||   ||||||||||||||||  ||||||||||  |||| |    
T  4386965 gca--gctctccaatccaataagataaaagtgatacaaatgggttacaagaaattagcttaaaagctcacaaagaacaaaacctaatttctactcatttt 4386868  T
Q  613 ttaagtcacccgcactc 629  Q
    | ||||||||| |||||    
T  4386867 tcaagtcacccacactc 4386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 320 - 498
Target Start/End: Complemental strand, 30710028 - 30709843
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 413  Q
    |||||||| ||  ||||||||| ||||||||||  |||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  30710028 agatgtgtggagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtttagagcaacaccataa 30709930  T
Q  414 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacacc--aacattgtttacccagttcgatgcaaaatgaccta 498  Q
     |||||||||||| |||||||||||||| ||| | |||||   ||||||||  || |||||| |||||||||| | ||| ||||||||    
T  30709929 gcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaaaagattgttgacccagttcggtccaatatgaccta 30709843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 34482106 - 34482174
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 438  Q
    |||||||||||||||||||||| |||| ||||| |||| ||   |||||| ||||||||| ||||||||    
T  34482106 caacaacaaacagacctagatcaaagtgtgaagtaacaccacgtacataaccaaagcaaccaagataag 34482174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 510 - 606
Target Start/End: Complemental strand, 44658536 - 44658440
Alignment:
Q  510 agagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatc 606  Q
    ||||||||  |||| ||| ||||| ||||||| ||||||||| ||||||||| |||||| |  | |  ||||||||||| | |||||||||||||||    
T  44658536 agagaataattctcagatccactaggataagagtgatacaaaaatgttacaataaattagctcactaactcacaaagaagatattctaatttctatc 44658440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 610
Target Start/End: Complemental strand, 1736442 - 1736247
Alignment:
Q  415 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 513  Q
    |||||||||||||| ||| |||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||  ||||    
T  1736442 cataatcaaagcaataaacataagcaatgaaagaaaggaacaaacacaccaatattgttgacccagttcggtccaatatgacctaatctggggg--agag 1736345  T
Q  514 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatt 610  Q
    |  ||| |||| || ||||||||| | | || ||||||   |||||||||||||||| |||  ||| ||| ||||||||   |||||||||| |||||    
T  1736344 agcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattaacttataagcttacacaagaacaagacctaatttctacccatt 1736247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 498
Target Start/End: Complemental strand, 18553058 - 18552936
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    ||||||| ||| |||||||| |  ||||||| || | ||||||||||||||| |||||||| ||| ||| | |||||   || ||||||| |||||| ||    
T  18553058 aaacagaactaaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataatcaatgaaagaaaggaacaaatacaccaagattgttgac 18552959  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    |||||||| | ||| ||||||||    
T  18552958 ccagttcggtccaatatgaccta 18552936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 25929617 - 25929556
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 438  Q
    ||||| ||||| |||||||| |  ||||||| || | |||||||||||||||||||||||||    
T  25929617 aaacaaacctaaatctaagtgtagagcaacaccacaaacataatcaaagcaacaaagataag 25929556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 415 - 604
Target Start/End: Complemental strand, 28617372 - 28617184
Alignment:
Q  415 cataatcaaagcaacaaagataagcaagaagggaaggagacaa-cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 513  Q
    |||| ||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||||||| | ||| |||||||||| ||| ||  ||||    
T  28617372 catattcaaagcaacaaagataagcaagaaaggaagaaaacaaacacaccaatattgtttacccagttcggtccaatatgacctactctggggg--agag 28617275  T
Q  514 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttcta 604  Q
    |  |||||||| || ||||| ||| | | ||||||||    |||||||||||||| | ||   ||||||||||||||||  ||||||||||    
T  28617274 agcagctctccaatccactaagatgaaagtgatacaatggggttacaagaaattagcttaaaagctcacaaagaacaaaacctaatttcta 28617184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 55860 - 55982
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa--gaagggaaggagacaacacaccaacattgttta 474  Q
    ||||||||||||||||||||||  ||||||| || |  |||||||||||| ||||||||||||||  ||||| |||||   |||||||||| ||| || |    
T  55860 aaacagacctagatctaagtatagagcaacaccacaagcataatcaaagc-acaaagataagcaatggaaggaaaggaacaaacacaccaagattattga 55958  T
Q  475 cccagttcgatgcaaaatgaccta 498  Q
    ||||||||| | ||| ||||||||    
T  55959 cccagttcggtccaatatgaccta 55982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 498
Target Start/End: Complemental strand, 4796852 - 4796730
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||  | |||||   |||||||||| |||||| ||    
T  4796852 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgagagaaaggaacaaacacaccaagattgttaac 4796753  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    |||||||| | ||||||||||||    
T  4796752 ccagttcggtccaaaatgaccta 4796730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 20284001 - 20284123
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||| || ||| | |||||   |||||||||| |||||| ||    
T  20284001 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacacaccaagattgttgac 20284100  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    |||||||| | ||| ||||||||    
T  20284101 ccagttcggtccaatatgaccta 20284123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 498
Target Start/End: Complemental strand, 46516502 - 46516373
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 468  Q
    |||||| |||||||| || |||||||| | |||||||| || |  |||||||||||||| | |||||| ||| ||| | |||||   |||||||||| ||    
T  46516502 caacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaagcaatagagataaacaatgaaagaaaggaacaaacacaccaagat 46516403  T
Q  469 tgtttacccagttcgatgcaaaatgaccta 498  Q
    |||| |||||||||| | ||| ||||||||    
T  46516402 tgttgacccagttcggtccaatatgaccta 46516373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 441
Target Start/End: Complemental strand, 2647888 - 2647817
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 441  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  2647888 caacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagcaataaagataagcaa 2647817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 555 - 621
Target Start/End: Complemental strand, 5817278 - 5817212
Alignment:
Q  555 gttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcac 621  Q
    |||||||||||||  ||||   ||||||||||||||||  |||||||||||||||| || |||||||    
T  5817278 gttacaagaaatttgcataagagctcacaaagaacaaaacctaatttctatccatttttcaagtcac 5817212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 498
Target Start/End: Complemental strand, 33332635 - 33332513
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    ||||| ||||| |||||||| |  ||||||| || |  |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  33332635 aaacaaacctaaatctaagtgtagagcaacaccataagcataatcaaatcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 33332536  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    ||||||||||  || ||||||||    
T  33332535 ccagttcgatctaatatgaccta 33332513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 445
Target Start/End: Complemental strand, 23575564 - 23575488
Alignment:
Q  371 aacaacaaacagacctagatctaagtatgaagcaacatcaga--cacataatcaaagcaacaaagataagcaagaag 445  Q
    ||||||||||| |||||||||||||| ||||||| | |||||  || | || ||||||||| |||||||| ||||||    
T  23575564 aacaacaaacaaacctagatctaagtgtgaagcatcgtcagaggcataaaaccaaagcaactaagataagaaagaag 23575488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 457 - 630
Target Start/End: Complemental strand, 102598 - 102427
Alignment:
Q  457 acacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgt 556  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||| | |||| ||  ||||| | ||||| ||| ||| ||||||||| ||||||||| | ||    
T  102598 acacaccaatattatttacccagttcgattcaaaattacctagtgtggaaga--gagaacaactctctgatccacaatgataagagtgatacaaagaggt 102501  T
Q  557 tacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactca 630  Q
    |||||||||||| | ||   ||||||||| ||||||  |||||||||| ||||| || ||||||| | ||||||    
T  102500 tacaagaaattatcttaaaagctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactca 102427  T

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Target: scaffold0006 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 2404 - 2526
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    |||||||||||||||||||| |  | ||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  2404 aaacagacctagatctaagtgtagaacaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 2503  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    |||||||| | ||| ||||||||    
T  2504 ccagttcgctccaatatgaccta 2526  T

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Target: scaffold0006; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 5595 - 5717
Alignment:
Q  377 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 475  Q
    |||||||||||||||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  5595 aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 5694  T
Q  476 ccagttcgatgcaaaatgaccta 498  Q
    |||||||| | ||| ||||||||    
T  5695 ccagttcggtccaatatgaccta 5717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 320 - 441
Target Start/End: Original strand, 85535 - 85659
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagaca 414  Q
    |||||||||||  ||||||||| ||||||||||  |||||| ||||| ||||||||||||    |||||||||||||||||| |  |||||||||| |      
T  85535 agatgtgtagagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaataaaacagacctagatctaagtgtagagcaacatcacaag 85633  T
Q  415 cataatcaaagcaacaaagataagcaa 441  Q
    ||||| |||||| ||||||||||||||    
T  85634 cataaccaaagc-acaaagataagcaa 85659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 513
Target Start/End: Original strand, 10634 - 10778
Alignment:
Q  370 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 468  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| |  ||||   |||||||||| ||    
T  10634 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacacaccaagat 10733  T
Q  469 tgtttacccagttcgatgcaaaatgacctactttggaggaaagag 513  Q
    | || |||||||||| | ||| |||||||| ||||| ||| ||||    
T  10734 tattgacccagttcggtccaatatgacctaatttgggggagagag 10778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 513
Target Start/End: Complemental strand, 23799725 - 23799625
Alignment:
Q  414 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 512  Q
    ||||||||||||||| | |||||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| ||||||||| |||    
T  23799725 acataatcaaagcaatagagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatttggaggagaga 23799626  T
Q  513 g 513  Q
    |    
T  23799625 g 23799625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 702
Target Start/End: Complemental strand, 33503740 - 33503697
Alignment:
Q  660 ttttttattcttc-tctaatgagatctcactacccaaggtgttt 702  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  33503740 ttttttattcttcctctaatgagatctcactacccaaggtgttt 33503697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 11771855 - 11771921
Alignment:
Q  371 aacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 437  Q
    ||||||||||| ||||||||||||||||||||||||| || |  |||||  ||| ||||||||||||    
T  11771855 aacaacaaacatacctagatctaagtatgaagcaacaccaaaagcataacaaaaacaacaaagataa 11771921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 498
Target Start/End: Complemental strand, 5702730 - 5702546
Alignment:
Q  320 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctca-agcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 413  Q
    |||||||| ||  ||| ||||| |||||||||||||||||| |||||  |||||||||||     |||||||||||||||||| |  |||| || || |     
T  5702730 agatgtgtggagcaaatgaagtggtaatcaatgaataaagt-gtctcctagcaacaacaacaaaaacagacctagatctaagtgtagagcatcaccacaa 5702632  T
Q  414 acataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 498  Q
     |||||| ||||||| | |||||||| | ||||| |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  5702631 gcataattaaagcaatagagataagctatgaaggaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 5702546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 5990793 - 5990748
Alignment:
Q  333 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 378  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||    
T  5990793 aaaggaagtagtaatcaatggataaagtagcatcaagcaacaacaa 5990748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 9055082 - 9055025
Alignment:
Q  321 gatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 378  Q
    ||||||| || ||||||||||| ||||||||| |||||||||||||||  ||||||||    
T  9055082 gatgtgtggagtaaaggaagtactaatcaatggataaagtagtctcaaaaaacaacaa 9055025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 7493328 - 7493264
Alignment:
Q  307 accaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca 371  Q
    ||||||| ||||  ||||||| ||  ||||||||||||||||||||  |||||||||||||||||    
T  7493328 accaataaaactatgatgtgtggagcaaaggaagtagtaatcaatgtgtaaagtagtctcaagca 7493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 8863920 - 8863833
Alignment:
Q  284 tgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca 371  Q
    ||||||||| ||| |||||| | ||||||| |||||| ||||||  |  |||||||||  |||| ||||||||||||||| |||||||    
T  8863920 tgtgaattcgaacaaataatcacaccaataaaacttaaatgtgtgaaacaaaggaagtgctaattaatgaataaagtagtttcaagca 8863833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 32916304 - 32916355
Alignment:
Q  356 aaagtagtctcaagcaacaacaaacagacctagatctaagtatgaagcaaca 407  Q
    |||||||||||||||||||||||| | || ||||| |||||||||| |||||    
T  32916304 aaagtagtctcaagcaacaacaaataaacttagatataagtatgaaccaaca 32916355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 621
Target Start/End: Complemental strand, 9054942 - 9054779
Alignment:
Q  456 aacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatg 555  Q
    |||||||||| ||| ||||| | ||||  | ||| |||||||||| ||||||| |||| |  ||||||  || ||||| ||| | | |||||||||   |    
T  9054942 aacacaccaatattatttactctgttcagtccaatatgacctactctggaggagagagca--gctctctaatccactaagatgaaagtgatacaaagtgg 9054845  T
Q  556 ttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcac 621  Q
    ||||||||||||| | ||   || ||||||||||||| ||||||||||| ||||| || |||||||    
T  9054844 ttacaagaaattagcttaaaagcgcacaaagaacaaaatctaatttctacccatttttcaagtcac 9054779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 378 - 437
Target Start/End: Original strand, 28387895 - 28387955
Alignment:
Q  378 aacagacctagatctaagtatgaagcaacatcagaca--cataatcaaagcaacaaagataa 437  Q
    ||||||||||||||||||| |||||||| |||| |||  |||||| ||||||||||||||||    
T  28387895 aacagacctagatctaagtgtgaagcaaaatca-acaagcataatgaaagcaacaaagataa 28387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 445
Target Start/End: Complemental strand, 34477417 - 34477335
Alignment:
Q  363 tctcaagcaacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaag 445  Q
    ||||||||||||||||| ||| |||||| ||||  |||| |||||  | | ||||| ||||||||| ||||||||| ||||||    
T  34477417 tctcaagcaacaacaaagagatctagatttaagggtgaaacaacactacaaacatagtcaaagcaataaagataagaaagaag 34477335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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