View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326-Insertion-9 (Length: 727)

Name: NF1326-Insertion-9
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326-Insertion-9
NF1326-Insertion-9
[»] chr2 (11 HSPs)
chr2 (8-727)||(32078757-32079484)
chr2 (533-620)||(3239105-3239195)
chr2 (620-715)||(9189806-9189902)
chr2 (533-638)||(19094576-19094680)
chr2 (620-715)||(9180727-9180823)
chr2 (620-715)||(25497328-25497424)
chr2 (13-75)||(32032270-32032332)
chr2 (620-715)||(10160727-10160823)
chr2 (17-71)||(32065436-32065490)
chr2 (562-615)||(27415186-27415238)
chr2 (620-714)||(42926763-42926860)
[»] chr3 (7 HSPs)
chr3 (620-715)||(55431309-55431405)
chr3 (620-715)||(7571221-7571317)
chr3 (620-715)||(23666126-23666222)
chr3 (620-715)||(24038374-24038470)
chr3 (620-715)||(39775731-39775827)
chr3 (620-715)||(49971427-49971523)
chr3 (587-619)||(28940260-28940292)
[»] chr5 (8 HSPs)
chr5 (620-715)||(7451754-7451850)
chr5 (603-715)||(37652833-37652945)
chr5 (551-620)||(15148506-15148575)
chr5 (622-715)||(41587163-41587257)
chr5 (620-715)||(26667268-26667364)
chr5 (620-715)||(26938865-26938961)
chr5 (620-715)||(29167976-29168072)
chr5 (620-673)||(6155465-6155518)
[»] chr7 (5 HSPs)
chr7 (561-640)||(1265345-1265422)
chr7 (556-715)||(23246936-23247094)
chr7 (620-715)||(26341195-26341291)
chr7 (587-715)||(4579472-4579600)
chr7 (556-603)||(18893949-18893997)
[»] scaffold0002 (1 HSPs)
scaffold0002 (620-715)||(4070-4166)
[»] chr4 (4 HSPs)
chr4 (620-715)||(37264567-37264663)
chr4 (619-652)||(41816780-41816813)
chr4 (620-700)||(12878235-12878316)
chr4 (619-652)||(39319627-39319660)
[»] chr6 (2 HSPs)
chr6 (619-652)||(6113039-6113072)
chr6 (621-715)||(24589167-24589262)
[»] chr8 (2 HSPs)
chr8 (619-715)||(31030524-31030620)
chr8 (573-632)||(27415458-27415515)
[»] scaffold0352 (1 HSPs)
scaffold0352 (620-715)||(7100-7196)
[»] scaffold0182 (1 HSPs)
scaffold0182 (620-715)||(9890-9986)


Alignment Details
Target: chr2 (Bit Score: 597; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 8 - 727
Target Start/End: Original strand, 32078757 - 32079484
Alignment:
Q  8 gtttgtctctgttctctacttggagaaggacatgtaatatttgtacaataaattaagaagtgtgcaattgttattgtttgtcttaaaaatacgatccata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32078757 gtttgtctctgttctctacttggagaaggacatgtaatatttgtacaataaattaagaagtgtgcaattgttattgtttgtcttaaaaatacaatccata 32078856  T
Q  108 ttttctcctatttcttttgatctagcatgcatcatcgataataaacatacaatccatattttctcttattccttctcttatttccatgaatttgattatc 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32078857 ttttctcttatttcttttgatctagcatgcatcatcgataataaacatacaatccatattttctcttattccttctcttatttccatgaatttgattatc 32078956  T
Q  208 att---taacgttgtatacacgtgagcaaaatgattgtaattgttgagaaaattgagaactaatagaaaatgataaaggggagaaaatgagagaaaatat 304  Q
    |||   |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  32078957 attaattaacgttgtatatacgtgagcaaaatgattgtaattgttgagaaaattgaaaactaatagaaaatgataaaagggagaaaatgagagaaaatat 32079056  T
Q  305 tgaagtctgaatcttaattttttgattacttgttattgaagctgttgcaattatgtatggtgattctatgagatagtataataagataccatgaccagaa 404  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32079057 tgaagtctgaatcttaattttttgattacttgttaatgaagctgttgcagttatgtatggtgattctatgagatagtataataagataccatgaccagaa 32079156  T
Q  405 ttgtgcttgacatatctaattactatgcatgcagctttatagtgtgaaagtgttggtgcatgtaagaattgacttatgttatgtctcgtatgtagtgtta 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32079157 ttgtgcttgacatatctaattactatgcatgcagctttatagtgtgaaagtgttggtgcatgtaagaattgacttatgttatgtctggtatgtagtgtta 32079256  T
Q  505 atatagagaagtcttccaataaacctcatgttggttttgaatttct-aattgtt-gtattttggatttctaaagtctacttttg-aaaagaattttcatc 601  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  32079257 atatagagaagtctaccaataaacctcatgttggttttgaatttctaaattgttagtattttggatttctaaagtctacttttgaaaaagaattttcatc 32079356  T
Q  602 caccgaagttattattggggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtcc-aaatttatg-caggtagactatcaatcacg 699  Q
    |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||  |||||||||||||||||||    
T  32079357 caccgaagttattatt-gggctgagtcacgatcaggttgctctctttaagaaattttgtgacgctgtccaaaatttatgtaaggtagactatcaatcacg 32079455  T
Q  700 ctgtytccaggat-aaacaggttcagcta 727  Q
     ||| |||||||| ||| |||||||||||    
T  32079456 ttgtctccaggataaaaaaggttcagcta 32079484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 620
Target Start/End: Complemental strand, 3239195 - 3239105
Alignment:
Q  533 tgttggttttgaattt-ctaattgttgtattttggatttctaaagtctacttttgaaaa--gaattttcatccaccgaagttattattggg 620  Q
    |||| ||||||||||| | ||||||| |||||||||||| |||| |||| |||||||||  ||||||||| ||| ||||||||||||||||    
T  3239195 tgtttgttttgaattttcaaattgttctattttggatttttaaattctatttttgaaaaacgaattttcagccatcgaagttattattggg 3239105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 9189902 - 9189806
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||||||| |||||||||  ||||||| | ||||||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  9189902 ggttgagtcacgaccaggttgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 9189806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 533 - 638
Target Start/End: Complemental strand, 19094680 - 19094576
Alignment:
Q  533 tgttggttttgaatttctaat-tgttgtattttggatttctaaagtctacttttgaaaagaattttcatccaccgaagttattattggggttgagtcacg 631  Q
    ||||| ||||| ||||||||  ||||||||||||||||| |||| |||| |||  |||| |||||||||| ||||||||| ||||| || ||||||||||    
T  19094680 tgttgtttttggatttctaaactgttgtattttggattt-taaaatctattttaaaaaataattttcatctaccgaagttgttattagg-ttgagtcacg 19094583  T
Q  632 atcaggt 638  Q
    |||||||    
T  19094582 atcaggt 19094576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 9180823 - 9180727
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||||||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  9180823 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 9180727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 25497424 - 25497328
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgcaggt-agactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  |||||| || ||| |||||||| |||| || |||||||||| ||||| |  |||||||||||    
T  25497424 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtaacactgcccaaatttgtgcaagtcagactatcaaccacgccgcctccaggataaa 25497328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 32032270 - 32032332
Alignment:
Q  13 tctctgttctctacttggagaaggacatgtaatatttgtacaataaattaagaagtgtgcaat 75  Q
    |||||| |||| ||||||||||||| ||||||||||| ||  |||||||| ||||||||||||    
T  32032270 tctctgctctccacttggagaaggagatgtaatatttctattataaattatgaagtgtgcaat 32032332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 10160823 - 10160727
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  10160823 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 10160727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 32065436 - 32065490
Alignment:
Q  17 tgttctctacttggagaaggacatgtaatatttgtacaataaattaagaagtgtg 71  Q
    ||||||| || ||||||||||| ||||||||  |||| |||||||||||||||||    
T  32065436 tgttctccacgtggagaaggacttgtaatatgggtactataaattaagaagtgtg 32065490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 615
Target Start/End: Complemental strand, 27415238 - 27415186
Alignment:
Q  562 tttggatttctaaagtctacttttgaaaagaattttcatccaccgaagttatta 615  Q
    ||||||||| ||||||||| ||||||||||||| |||||| ||| |||||||||    
T  27415238 tttggatttataaagtcta-ttttgaaaagaatgttcatctacccaagttatta 27415186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 620 - 714
Target Start/End: Complemental strand, 42926860 - 42926763
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaa--tttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataa 714  Q
    ||||||||||||||||||  ||| ||||||||| |  ||||||| | ||| ||||| || ||| |||||||||||||| ||||| |  ||||||||||    
T  42926860 ggttgagtcacgatcaggccgctctctttaagacacgtttcgtggcactgcccaaaattgtgcaaggtagactatcaaccacgccgcctccaggataa 42926763  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 55431309 - 55431405
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||||||||| ||| |||||||||  ||||||||| ||||| ||| |||||| ||| |||||||||| ||||| |  |||||||||||    
T  55431309 ggttgagtcacgatcaggtcgctctctttaagacgtttcgtgacactgtcaaaaattatgcaaggcagactatcaaccacgccgcctccaggataaa 55431405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 7571317 - 7571221
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||  |||||||||||||||| |  |||||||||||    
T  7571317 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaatcacgccgcctccaggataaa 7571221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 23666222 - 23666126
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  23666222 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 23666126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 24038470 - 24038374
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  24038470 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 24038374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 39775827 - 39775731
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  39775827 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 39775731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 49971523 - 49971427
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgca-ggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| | | |||||||||  ||||||| | || |||||| || |||| || |||||||||||||||| |  |||||||||||    
T  49971523 ggttgagtcacgaccaggtcgatctctttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaatcacgccgcctccaggataaa 49971427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 587 - 619
Target Start/End: Complemental strand, 28940292 - 28940260
Alignment:
Q  587 aaaagaattttcatccaccgaagttattattgg 619  Q
    ||||||||||||||||| |||||||||||||||    
T  28940292 aaaagaattttcatccatcgaagttattattgg 28940260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 7451754 - 7451850
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||||||||| || ||| ||| |||||||||| |||||||  |||||||||||    
T  7451754 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgctgcctccaggataaa 7451850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 715
Target Start/End: Complemental strand, 37652945 - 37652833
Alignment:
Q  603 accgaagttattattggggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgct 701  Q
    ||||||||| ||||| || ||||||||||||||||| ||| |||||||||  |||||||||  |||||||| || ||| ||| |||||||||| |||||     
T  37652945 accgaagttgttattagg-ttgagtcacgatcaggtcgctctctttaagacgtttcgtgacattgtccaaaattgtgcaaggcagactatcaaccacgcc 37652847  T
Q  702 gtytccaggataaa 715  Q
       |||||||||||    
T  37652846 acctccaggataaa 37652833  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 620
Target Start/End: Original strand, 15148506 - 15148575
Alignment:
Q  551 aattgttgtattttggatttctaaagtctacttttgaaaa-gaattttcatccaccgaagttattattggg 620  Q
    |||||||||||||||||||||| || |||| ||||||||| ||||||||||  ||| ||||||||||||||    
T  15148506 aattgttgtattttggatttctgaaatcta-ttttgaaaatgaattttcatttaccaaagttattattggg 15148575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 715
Target Start/End: Complemental strand, 41587257 - 41587163
Alignment:
Q  622 ttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||| ||||||||| |||||||||  ||||||||| |||| |||| || ||| ||  |||||||||| ||||| |  |||||||||||    
T  41587257 ttgagtcacgaccaggttgctctctttaagacgtttcgtgacactgttcaaaattgtgcaagacagactatcaaccacgccgcctccaggataaa 41587163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 26667268 - 26667364
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  26667268 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 26667364  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 26938865 - 26938961
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  26938865 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 26938961  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 29168072 - 29167976
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  29168072 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 29167976  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 620 - 673
Target Start/End: Complemental strand, 6155518 - 6155465
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaa 673  Q
    ||||||||||||||||||| ||| |||||||||  ||||||| | |||||||||    
T  6155518 ggttgagtcacgatcaggtcgctctctttaagacgtttcgtggcactgtccaaa 6155465  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 561 - 640
Target Start/End: Complemental strand, 1265422 - 1265345
Alignment:
Q  561 ttttggatttctaaagtctacttttgaaaagaattttcatccaccgaagttattattggggttgagtcacgatcaggttg 640  Q
    ||||||||||  |||||||| |||| |||||||||||||||||||||| |||||  | ||||||||| ||||||||||||    
T  1265422 ttttggattttcaaagtcta-ttttaaaaagaattttcatccaccgaatttattgat-gggttgagttacgatcaggttg 1265345  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 715
Target Start/End: Complemental strand, 23247094 - 23246936
Alignment:
Q  556 ttgtattttggatttctaaagtctacttttgaaaagaattttcatccaccgaagttattattggggttgagtcacgatcaggttgctttctttaagaaat 655  Q
    |||||||||||||||| ||| || | |||  |||| |||||||||| ||||||||| ||| | |  ||||||||||| ||||| ||| |||||||||  |    
T  23247094 ttgtattttggatttccaaa-tcaattttgaaaaataattttcatctaccgaagttgttactaga-ttgagtcacgaccaggtcgctctctttaagatgt 23246997  T
Q  656 ttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    |||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  23246996 ttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 23246936  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 26341195 - 26341291
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| ||||||||| |||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  26341195 ggttgagtcacgaccaggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 26341291  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 715
Target Start/End: Original strand, 4579472 - 4579600
Alignment:
Q  587 aaaagaattttcatccaccgaagttattattggggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggta 685  Q
    |||| |||||||||| | ||||||| ||| | || ||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |    
T  4579472 aaaataattttcatctatcgaagttgttactagg-ttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggca 4579570  T
Q  686 gactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||| ||||| |  |||||||||||    
T  4579571 gactatcaaccacgccgcctccaggataaa 4579600  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 556 - 603
Target Start/End: Original strand, 18893949 - 18893997
Alignment:
Q  556 ttgtattttggatttctaaagtctacttttg-aaaagaattttcatcca 603  Q
    ||||||||||| ||||||||||||| ||||| |||||| ||||||||||    
T  18893949 ttgtattttgggtttctaaagtctatttttgaaaaagatttttcatcca 18893997  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 4070 - 4166
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| ||||||||| |||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  4070 ggttgagtcacgaccaggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 4166  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 37264663 - 37264567
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| |||||| ||| |||||||||| ||||| |  |||||||||||    
T  37264663 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattatgcaaggcagactatcaaccacgccgcctccaggataaa 37264567  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 652
Target Start/End: Original strand, 41816780 - 41816813
Alignment:
Q  619 gggttgagtcacgatcaggttgctttctttaaga 652  Q
    ||||||||||||||||||||||||||||||||||    
T  41816780 gggttgagtcacgatcaggttgctttctttaaga 41816813  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 620 - 700
Target Start/End: Original strand, 12878235 - 12878316
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgc 700  Q
    ||||||||||||||||||| ||| |||||||||  ||||||||| || | |||| || ||| | | ||||||||||||||||    
T  12878235 ggttgagtcacgatcaggtcgctctctttaagacgtttcgtgacacttttcaaaattgtgcaaagcagactatcaatcacgc 12878316  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 652
Target Start/End: Original strand, 39319627 - 39319660
Alignment:
Q  619 gggttgagtcacgatcaggttgctttctttaaga 652  Q
    |||||||||||||||||||| |||||||||||||    
T  39319627 gggttgagtcacgatcaggtcgctttctttaaga 39319660  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 652
Target Start/End: Complemental strand, 6113072 - 6113039
Alignment:
Q  619 gggttgagtcacgatcaggttgctttctttaaga 652  Q
    ||||||||||||||||||||||||||||||||||    
T  6113072 gggttgagtcacgatcaggttgctttctttaaga 6113039  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 715
Target Start/End: Complemental strand, 24589262 - 24589167
Alignment:
Q  621 gttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgcagg-tagactatcaatcacgctgtytccaggataaa 715  Q
    |||||||||||||||| | ||| ||||||| |  ||||||||| || |||||| || |||| | ||||||||||| ||||| || |||||||||||    
T  24589262 gttgagtcacgatcagatcgctctctttaaaacgtttcgtgacactttccaaaattgtgcaagatagactatcaaccacgccgtctccaggataaa 24589167  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 715
Target Start/End: Original strand, 31030524 - 31030620
Alignment:
Q  619 gggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    |||||||||||||| ||||| ||| |||||||||  ||||| ||| ||  ||||| |||||| |||||||||| ||| ||||| || |||||||||||    
T  31030524 gggttgagtcacgaccaggtcgctctctttaagacgtttcgcgacactacccaaa-ttatgcaaggtagactaacaaccacgccgtctccaggataaa 31030620  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 573 - 632
Target Start/End: Original strand, 27415458 - 27415515
Alignment:
Q  573 aaagtctacttttgaaaagaattttcatccaccgaagttattattggggttgagtcacga 632  Q
    |||||||| |||  |||||||||||  ||||||||||||||||||  |||||||||||||    
T  27415458 aaagtctattttgaaaaagaatttttgtccaccgaagttattatt--ggttgagtcacga 27415515  T

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Target: scaffold0352 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 7100 - 7196
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  7100 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 7196  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 715
Target Start/End: Complemental strand, 9986 - 9890
Alignment:
Q  620 ggttgagtcacgatcaggttgctttctttaagaaatttcgtgacgctgtccaaatttatgc-aggtagactatcaatcacgctgtytccaggataaa 715  Q
    ||||||||||||| ||||| ||| |||||||||  ||||||| | ||| ||||| || ||| ||| |||||||||| ||||| |  |||||||||||    
T  9986 ggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaa 9890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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