View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_high_13 (Length: 395)

Name: NF13260_high_13
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_high_13
NF13260_high_13
[»] chr6 (25 HSPs)
chr6 (169-378)||(28185103-28185314)
chr6 (169-378)||(28180851-28181062)
chr6 (228-379)||(28234357-28234513)
chr6 (216-379)||(28226729-28226899)
chr6 (219-379)||(28325265-28325430)
chr6 (3-143)||(28180706-28180851)
chr6 (3-143)||(28184958-28185103)
chr6 (295-379)||(28242669-28242753)
chr6 (273-378)||(28297952-28298057)
chr6 (273-378)||(28514016-28514121)
chr6 (221-379)||(28098607-28098766)
chr6 (53-158)||(28149338-28149444)
chr6 (295-358)||(26936959-26937022)
chr6 (293-379)||(27611240-27611326)
chr6 (295-379)||(26884028-26884112)
chr6 (295-379)||(27725083-27725167)
chr6 (295-379)||(28786143-28786227)
chr6 (295-379)||(28792264-28792348)
chr6 (257-377)||(2184118-2184235)
chr6 (295-368)||(26342183-26342256)
chr6 (295-379)||(26861481-26861565)
chr6 (295-379)||(27604943-27605027)
chr6 (99-164)||(28226642-28226709)
chr6 (295-379)||(27229097-27229181)
chr6 (295-379)||(27718617-27718701)
[»] scaffold0038 (5 HSPs)
scaffold0038 (228-379)||(34518-34674)
scaffold0038 (216-379)||(27227-27397)
scaffold0038 (219-379)||(116580-116745)
scaffold0038 (295-379)||(42831-42915)
scaffold0038 (99-164)||(27140-27207)
[»] scaffold0019 (1 HSPs)
scaffold0019 (238-379)||(58520-58666)
[»] chr2 (1 HSPs)
chr2 (297-379)||(3279555-3279637)
[»] scaffold0349 (1 HSPs)
scaffold0349 (295-379)||(3660-3744)
[»] scaffold0277 (1 HSPs)
scaffold0277 (295-379)||(4909-4993)
[»] chr8 (1 HSPs)
chr8 (307-379)||(31903728-31903800)
[»] chr4 (1 HSPs)
chr4 (295-379)||(5091192-5091276)
[»] scaffold0781 (1 HSPs)
scaffold0781 (257-377)||(91-208)
[»] scaffold1254 (1 HSPs)
scaffold1254 (325-379)||(155-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (325-379)||(7420-7474)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 169 - 378
Target Start/End: Original strand, 28185103 - 28185314
Alignment:
Q  169 tttcacttcttgatttattttaagaaccctatatatacacccagtttcacattcttacttctcatactcttcttacttcctttttatt-----ttctcat 263  Q
    ||||||||||||||||||||| | |||||||||||||||| ||  | ||||||||||||||||||||| |||||||||||||||||||     |||||||    
T  28185103 tttcacttcttgatttattttga-aaccctatatatacactca--tccacattcttacttctcatactattcttacttcctttttattctctattctcat 28185199  T
Q  264 ggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggt 363  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||    
T  28185200 ggctatgcttcaatcatccgtctcctcatcctcttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgt 28185299  T
Q  364 tttaccggaaatctc 378  Q
    ||||| |||||||||    
T  28185300 tttactggaaatctc 28185314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 169 - 378
Target Start/End: Original strand, 28180851 - 28181062
Alignment:
Q  169 tttcacttcttgatttattttaagaaccctatatatacacccagtttcacattcttacttctcatactcttcttacttcctttttatt-----ttctcat 263  Q
    ||||||||||||||||||||| | |||||||||||||||| ||  | ||||||||||||||||||||| |||||||||||||||||||     |||||||    
T  28180851 tttcacttcttgatttattttga-aaccctatatatacactca--tccacattcttacttctcatactattcttacttcctttttattctctattctcat 28180947  T
Q  264 ggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggt 363  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||    
T  28180948 ggctatgcttcaatcatccgtctcctcatcctcttccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggt 28181047  T
Q  364 tttaccggaaatctc 378  Q
    ||||| |||||||||    
T  28181048 tttactggaaatctc 28181062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 228 - 379
Target Start/End: Original strand, 28234357 - 28234513
Alignment:
Q  228 tctcatactcttcttacttcctttttattttct-----catggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatg 322  Q
    |||||||||||||||||||||||||| || |||     ||||||| ||||||||||||||||| || || ||||||| ||||||||||||||||||||||    
T  28234357 tctcatactcttcttacttcctttttgttctctactctcatggctctgcttcaatcatccgtccccccctcttcttctttctcctatggattcacctatg 28234456  T
Q  323 acgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28234457 acgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctct 28234513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 216 - 379
Target Start/End: Original strand, 28226729 - 28226899
Alignment:
Q  216 cacattcttacttctcatactcttcttacttcctttttatt-----ttctcat--ggctatgcttcaatcatccgtctcctccccttcttccttctccta 308  Q
    |||||||||| ||||||||| ||| ||||||||||| ||||     |||||||  ||||||||||||||||||||||||  |||||||||||||||| ||    
T  28226729 cacattcttaattctcatacacttattacttcctttctattctctattctcatatggctatgcttcaatcatccgtctctcccccttcttccttctctta 28226828  T
Q  309 tggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  28226829 tggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctct 28226899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 219 - 379
Target Start/End: Original strand, 28325265 - 28325430
Alignment:
Q  219 attcttacttctcatactcttcttacttcctttttattt-----tctcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggat 313  Q
    |||||| |||||||||||||||| | ||||| ||||||      |||||||||| | |||||||||||| |||| ||| | |||||||| ||||||||||    
T  28325265 attcttccttctcatactcttctcatttcctctttattcactactctcatggctctacttcaatcatccatctcttcctcctcttccttttcctatggat 28325364  T
Q  314 tcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  28325365 tcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctct 28325430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 28180706 - 28180851
Alignment:
Q  3 ttaaaatcttaagttgaatcggtgaaacgttgaagttgattagcatctgcgttgatttgtc-----ttctcttttgaatttggtagaatggaaatagaaa 97  Q
    ||||||||||||||||||||||||||| |||||||||| | ||  ||| ||||||||||||     || ||||||| ||||||||||  |||||| | ||    
T  28180706 ttaaaatcttaagttgaatcggtgaaatgttgaagttgttaagtgtcttcgttgatttgtcctgtcttttcttttgtatttggtagataggaaatgggaa 28180805  T
Q  98 ggaagtttcactcactatggtctttggtcaatggatcctcttaagt 143  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||    
T  28180806 ggaagtttaactcacgatggtctttggtcaatggatcctcttaagt 28180851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 28184958 - 28185103
Alignment:
Q  3 ttaaaatcttaagttgaatcggtgaaacgttgaagttgattagcatctgcgttgatttgtc-----ttctcttttgaatttggtagaatggaaatagaaa 97  Q
    ||||||||||||||||||||||||||| |||||||||| | ||  ||| ||||||||||||     || ||||||| ||||||||||  |||||| | ||    
T  28184958 ttaaaatcttaagttgaatcggtgaaatgttgaagttgttaagtgtcttcgttgatttgtcctgtcttttcttttgtatttggtagataggaaatgggaa 28185057  T
Q  98 ggaagtttcactcactatggtctttggtcaatggatcctcttaagt 143  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||    
T  28185058 ggaagtttaactcacgatggtctttggtcaatggatcctcttaagt 28185103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 28242669 - 28242753
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    |||||| |||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  28242669 tcttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctct 28242753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 273 - 378
Target Start/End: Complemental strand, 28298057 - 28297952
Alignment:
Q  273 tcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgga 372  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||| |||||  ||||||  |||    
T  28298057 tcaatcatccatctcttcctcctcttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgctacagttttattgga 28297958  T
Q  373 aatctc 378  Q
    ||||||    
T  28297957 aatctc 28297952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 273 - 378
Target Start/End: Original strand, 28514016 - 28514121
Alignment:
Q  273 tcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgga 372  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||| |||||  ||||||  |||    
T  28514016 tcaatcatccatctcttcctcctcttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgctacagttttattgga 28514115  T
Q  373 aatctc 378  Q
    ||||||    
T  28514116 aatctc 28514121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 28098766 - 28098607
Alignment:
Q  221 tcttacttctcatactcttcttacttcctttttattt----tctcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattca 316  Q
    |||||||||||| ||||||||||||||| |||  |||    ||||||||||||||| ||||||||   ||| | |   ||||| ||||| ||||||||||    
T  28098766 tcttacttctcaaactcttcttacttccatttcttttctcatctcatggctatgctccaatcatcttcctctttc---tcttcattctcttatggattca 28098670  T
Q  317 cctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||||||||||| |||| |||||| || |  |||||||| ||||||||||| ||||||||||    
T  28098669 cctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctct 28098607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 28149338 - 28149444
Alignment:
Q  53 gttgatttgtcttctcttttgaatttggtagaat-ggaaatagaaaggaagtttcactcactatggtctttggtcaatggatcctcttaagtgaaaccgt 151  Q
    ||||||||||||| ||||||| ||||||||  || |||||| | |||||||||| |||||| | |||||||||||| |||||||||| ||||| ||||||    
T  28149338 gttgatttgtcttttcttttgtatttggtaagataggaaatgggaaggaagtttaactcacaacggtctttggtcagtggatcctctaaagtgcaaccgt 28149437  T
Q  152 ggtgcca 158  Q
    | |||||    
T  28149438 gttgcca 28149444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 26936959 - 26937022
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgct 358  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||||| |  ||||||||||    
T  26936959 tcttccttctcttatggattcacctatgacgtgttcctcagtttcagaggcaccgacactcgct 26937022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 27611326 - 27611240
Alignment:
Q  293 cttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||||| || |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||||||||||||||    
T  27611326 cttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctct 27611240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 26884028 - 26884112
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| || |||||||||||||| ||  | |||||||| ||||| ||||| ||||||||||| |||||||| || ||||||||||    
T  26884028 tcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctct 26884112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 27725167 - 27725083
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| || |||||||||||||| ||  | ||||||||||||||||| || | |||||||||  | |||||||||||||||||||    
T  27725167 tcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctct 27725083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 28786143 - 28786227
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||||||||||||||    
T  28786143 tcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctct 28786227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 28792264 - 28792348
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||||||||||||||    
T  28792264 tcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctct 28792348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 377
Target Start/End: Original strand, 2184118 - 2184235
Alignment:
Q  257 ttctcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcg 356  Q
    |||||||||||||||  ||||||||   ||||||  |||| |||| |||| |   |||||||||| |||||||||| ||||| |||||   |||||||||    
T  2184118 ttctcatggctatgccacaatcatcttcctcctcttcttcatcctcctccaa---attcacctataacgtgttcctaagtttcagaggagctgacactcg 2184214  T
Q  357 ctatggttttaccggaaatct 377  Q
    | ||||||||||||| |||||    
T  2184215 ccatggttttaccggcaatct 2184235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 26342256 - 26342183
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttac 368  Q
    ||||| ||||| ||||||||||| ||||| |||||||| | |||||| || | || ||||||||||||||||||    
T  26342256 tcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttac 26342183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 26861481 - 26861565
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    |||||| | |||||||||||||  ||  | || ||||| ||||| ||||| ||||||||||| |||||||||||||| |||||||    
T  26861481 tcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctct 26861565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 27605027 - 27604943
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| || ||||||| |||||| ||  | ||||||||||||||||| || | ||||||||| || ||||||||||| |||||||    
T  27605027 tcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctct 27604943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 28226642 - 28226709
Alignment:
Q  99 gaagtttcactcactatggtctttggtcaatggatc--ctcttaagtgaaaccgtggtgccattttta 164  Q
    |||||||||||| | |||||||||||||||||||||  |||||||||| ||||| | |||| ||||||    
T  28226642 gaagtttcactcccaatggtctttggtcaatggatcctctcttaagtgcaaccgagttgcctttttta 28226709  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 27229097 - 27229181
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| || |||| ||||||||| ||  | ||||||||||||||||| || | |||||||||  | ||||||||||| |||||||    
T  27229097 tcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctct 27229181  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 27718701 - 27718617
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| |||||| |||||||||| ||  | |||||||| |||||||| || | |||||||||  |  ||||||||||||||||||    
T  27718701 tcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctct 27718617  T

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Target: scaffold0038 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 228 - 379
Target Start/End: Original strand, 34518 - 34674
Alignment:
Q  228 tctcatactcttcttacttcctttttattttct-----catggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatg 322  Q
    |||||||||||||||||||||||||| || |||     ||||||| ||||||||||||||||| || || ||||||| ||||||||||||||||||||||    
T  34518 tctcatactcttcttacttcctttttgttctctactctcatggctctgcttcaatcatccgtccccccctcttcttctttctcctatggattcacctatg 34617  T
Q  323 acgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34618 acgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctct 34674  T

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Target: scaffold0038; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 216 - 379
Target Start/End: Original strand, 27227 - 27397
Alignment:
Q  216 cacattcttacttctcatactcttcttacttcctttttatt-----ttctcat--ggctatgcttcaatcatccgtctcctccccttcttccttctccta 308  Q
    |||||||||| ||||||||| ||| ||||||||||| ||||     |||||||  ||||||||||||||||||||||||  |||||||||||||||| ||    
T  27227 cacattcttaattctcatacacttattacttcctttctattctctattctcatatggctatgcttcaatcatccgtctctcccccttcttccttctctta 27326  T
Q  309 tggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  27327 tggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctct 27397  T

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Target: scaffold0038; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 219 - 379
Target Start/End: Original strand, 116580 - 116745
Alignment:
Q  219 attcttacttctcatactcttcttacttcctttttattt-----tctcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggat 313  Q
    |||||| |||||||||||||||| | ||||| ||||||      |||||||||| | |||||||||||| |||| ||| | |||||||| ||||||||||    
T  116580 attcttccttctcatactcttctcatttcctctttattcactactctcatggctctacttcaatcatccatctcttcctcctcttccttttcctatggat 116679  T
Q  314 tcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  116680 tcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctct 116745  T

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Target: scaffold0038; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 42831 - 42915
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    |||||| |||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  42831 tcttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctct 42915  T

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Target: scaffold0038; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 27140 - 27207
Alignment:
Q  99 gaagtttcactcactatggtctttggtcaatggatc--ctcttaagtgaaaccgtggtgccattttta 164  Q
    |||||||||||| | |||||||||||||||||||||  |||||||||| ||||| | |||| ||||||    
T  27140 gaagtttcactcccaatggtctttggtcaatggatcctctcttaagtgcaaccgagttgcctttttta 27207  T

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Target: scaffold0019 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 238 - 379
Target Start/End: Complemental strand, 58666 - 58520
Alignment:
Q  238 ttcttacttcctttttattttc-----tcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttcct 332  Q
    ||||||||||||||||||| ||     ||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||| ||||||||||    
T  58666 ttcttacttcctttttattctctactgtcatggctatgcttcaatcatccatctcttcctcctcttccttctcctatggattcacctatcacgtgttcct 58567  T
Q  333 tagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  58566 tagctttagaggttgtgacactcgctatggttttactggaaatctct 58520  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 3279555 - 3279637
Alignment:
Q  297 ttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||||||| |||||||||||||||||||| ||| | |||||||| || | ||||||||||||||||||||| ||||||||||    
T  3279555 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctct 3279637  T

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Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 3744 - 3660
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| || |||||||||||||| ||  | ||||||||||||||||| || | |||||||||  | |||||||||||||||||||    
T  3744 tcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctct 3660  T

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Target: scaffold0277 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 4993 - 4909
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||||||||||||||    
T  4993 tcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctct 4909  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 31903728 - 31903800
Alignment:
Q  307 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    |||||||||||||| || |||||||| || ||||||||    |||||||||||||||||||| ||||||||||    
T  31903728 tatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctct 31903800  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 5091276 - 5091192
Alignment:
Q  295 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||| |||||||| ||||| ||||| ||||| || |||||||||||||| |  |||||||| || |||||||| ||||||||||    
T  5091276 tcttctttctcctacggatttacctacgacgtctttcttagttttagaggcaccgacactcgttacggttttactggaaatctct 5091192  T

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Target: scaffold0781 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 208 - 91
Alignment:
Q  257 ttctcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcg 356  Q
    |||||||||||||||  ||||||||   ||||||  |||| |||| |||| |   |||||||||| |||||||||| ||||| |||||   |||||||||    
T  208 ttctcatggctatgccacaatcatcttcctcctcttcttcatcctcctccaa---attcacctataacgtgttcctaagtttcagaggagctgacactcg 112  T
Q  357 ctatggttttaccggaaatct 377  Q
    | ||||||||||||| |||||    
T  111 ccatggttttaccggcaatct 91  T

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Target: scaffold1254 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 209 - 155
Alignment:
Q  325 gtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||||||||||||||| || | |||||||||| | ||||||||||| |||||||    
T  209 gtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctct 155  T

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Target: scaffold0419 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 7420 - 7474
Alignment:
Q  325 gtgttccttagttttagaggtagtgacactcgctatggttttaccggaaatctct 379  Q
    ||||||||||||||||| || | |||||||||| | ||||||||||| |||||||    
T  7420 gtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctct 7474  T

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