View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_high_17 (Length: 358)

Name: NF13260_high_17
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_high_17
NF13260_high_17
[»] chr6 (4 HSPs)
chr6 (19-344)||(22506086-22506418)
chr6 (187-317)||(22501147-22501279)
chr6 (110-164)||(21882116-21882170)
chr6 (72-130)||(30777199-30777257)
[»] chr3 (5 HSPs)
chr3 (19-170)||(3195324-3195475)
chr3 (62-168)||(10877115-10877221)
chr3 (19-124)||(32324539-32324644)
chr3 (18-124)||(34964186-34964292)
chr3 (19-106)||(40291420-40291507)
[»] chr1 (2 HSPs)
chr1 (49-153)||(27126379-27126483)
chr1 (60-106)||(51103025-51103071)
[»] chr4 (2 HSPs)
chr4 (19-168)||(4299384-4299534)
chr4 (50-144)||(56576421-56576514)
[»] chr2 (5 HSPs)
chr2 (19-141)||(12023712-12023834)
chr2 (187-257)||(22983454-22983526)
chr2 (29-105)||(9553414-9553489)
chr2 (49-161)||(23767387-23767499)
chr2 (74-161)||(23796557-23796644)
[»] chr8 (2 HSPs)
chr8 (84-168)||(3683659-3683743)
chr8 (126-168)||(1908213-1908255)
[»] chr7 (1 HSPs)
chr7 (23-123)||(33677416-33677515)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 22506418 - 22506086
Alignment:
Q  19 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22506418 gttaaccctccggttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggccaataattgttccaactaggaatcga 22506319  T
Q  119 actcggcttctctcaaacaattcatcgttggtgaagttcattaaccacttaaa-------tgtagatagtactcatcaagtgtttaactaactgatactt 211  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  22506318 actcggcttctcccaaacaattcatcgttggtgaagttcattaaccacttaaaacttaaatgtagatagtactcatcaagtgtttaactaactgatactt 22506219  T
Q  212 ctccatcaagaagttctcaccttttaagagaaagatcattagatttaagatgtctttctttcaaatctatctctgatccttttgcatcaattatgattta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22506218 ctccatcaagaagttctcaccttttaagagaaagatcattagatttaagatgtctttctttgaaatctatctctgatccttttgcatcaattatgattta 22506119  T
Q  312 atttttctactattcagtttatactggtctgcc 344  Q
     ||||||||||||||||| ||||||||||||||    
T  22506118 gtttttctactattcagtctatactggtctgcc 22506086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 22501279 - 22501147
Alignment:
Q  187 tcaagtgtttaactaactgatacttctccatcaagaagt--tctcaccttttaagagaaagatcattagatttaagatgtctttctttcaaatctatctc 284  Q
    ||||||||||||||||||||||||| | ||||||||| |  |||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||     
T  22501279 tcaagtgtttaactaactgatacttttgcatcaagaaatcttctcacgttttaagagaaagatcattagatttaagatgcctttctgtccaatctatctt 22501180  T
Q  285 tgatccttttgcatcaattatgatttaattttt 317  Q
     ||||||| |||||||||||||||||| |||||    
T  22501179 agatccttctgcatcaattatgatttagttttt 22501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 21882116 - 21882170
Alignment:
Q  110 aggaatcgaactcggcttctctcaaacaattcatcgttggtgaagttcattaacc 164  Q
    |||| ||||||||||||||| |||||||||||||| |  ||||||||||||||||    
T  21882116 aggagtcgaactcggcttctttcaaacaattcatcatctgtgaagttcattaacc 21882170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 30777199 - 30777257
Alignment:
Q  72 gtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctc 130  Q
    |||||||||||||||||| || |  |||| ||||| ||||||||||||||||| |||||    
T  30777199 gtgaggtaaggatagtctagccacgaattattccagctaggaatcgaactcgggttctc 30777257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 3195475 - 3195324
Alignment:
Q  19 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 118  Q
    ||||||||||||||| |||| |||||| | |||| |||| ||||||||| |   | ||||||||||||||| |  || |||||||||| |||||||  ||    
T  3195475 gttaaccctccagtttccaggggaaagaggccctggtaatccggagttcagttataaggtaaggatagtctcgtcaagaattgttccacctaggaaatga 3195376  T
Q  119 actcggcttctctcaaacaattcatcgttggtgaagttcattaaccacttaa 170  Q
    |||| | ||||| | | | ||||||| ||||||||| |||||||||||||||    
T  3195375 actcagtttctcccgagcgattcatccttggtgaagctcattaaccacttaa 3195324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 10877221 - 10877115
Alignment:
Q  62 gagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttggtgaagttcatta 161  Q
    |||||||||  |||||||||||||||||||| || |||||||| |  |||||||||||||| | ||||| ||||| |||| || | ||||||| ||||||    
T  10877221 gagttcggccatgaggtaaggatagtctggccaagaattgttctacataggaatcgaactcaggttctcccaaacgattcgtcctcggtgaagctcatta 10877122  T
Q  162 accactt 168  Q
    |||||||    
T  10877121 accactt 10877115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 32324539 - 32324644
Alignment:
Q  19 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 118  Q
    |||||||||||||||||  | |||||||| ||||||||| |||||||| ||| | |||||||| | || ||||| || ||||||||| || ||||||| |    
T  32324539 gttaaccctccagttccttggggaaaggggccctagtaatccggagtttggccgggaggtaagtaaagcctggccaagaattgttcccaccaggaatcaa 32324638  T
Q  119 actcgg 124  Q
    ||||||    
T  32324639 actcgg 32324644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 34964292 - 34964186
Alignment:
Q  18 agttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcg 117  Q
    |||||||||||| ||||| || |||||||  || ||||||   |||||||||| | |||||||| | |||||||  |||||||||||| | |||||||||    
T  34964292 agttaaccctccggttcctaggggaaaggtgccatagtaagttggagttcggctgggaggtaagtaaagtctggtcaataattgttcccattaggaatcg 34964193  T
Q  118 aactcgg 124  Q
    |||||||    
T  34964192 aactcgg 34964186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 40291420 - 40291507
Alignment:
Q  19 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttcca 106  Q
    ||||||||||| |||| ||| |||| ||| | ||||||| ||||||| |||  |||||||||||||| ||| | ||| ||||||||||    
T  40291420 gttaaccctccggttctcagaggaatggggctctagtaatccggagtgcggtcgtgaggtaaggatactcttgttaagaattgttcca 40291507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 27126379 - 27126483
Alignment:
Q  49 ccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttg 148  Q
    |||||||||  ||||||||||  |||||||||||||| |||||| || |||||||||| ||| |||||||| | || ||||||||||| |||  || |||    
T  27126379 ccctagtaattcggagttcggtcgtgaggtaaggataatctggccaaaaattgttccatctaagaatcgaatttgggttctctcaaacgattagtccttg 27126478  T
Q  149 gtgaa 153  Q
    |||||    
T  27126479 gtgaa 27126483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 51103071 - 51103025
Alignment:
Q  60 cggagttcggcagtgaggtaaggatagtctggctaataattgttcca 106  Q
    ||||||| ||| |||||||||| ||||||||||||| ||||||||||    
T  51103071 cggagtttggctgtgaggtaagtatagtctggctaagaattgttcca 51103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 4299534 - 4299384
Alignment:
Q  19 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 118  Q
    ||||||||||| ||||| || |||||||  ||||||||| |||| |||| || | |||||||| | || |||||||| ||||||| || | |||||||||    
T  4299534 gttaaccctccggttcctaggggaaaggagccctagtaatccggtgttcagccgcgaggtaagtaaagcctggctaagaattgttacacccaggaatcga 4299435  T
Q  119 actcggcttctctcaaacaattcat-cgttggtgaagttcattaaccactt 168  Q
    |||||  ||||| | | | |||| | | ||||||||| |||||||||||||    
T  4299434 actcgcgttctcccgagcgattcgtcctttggtgaagctcattaaccactt 4299384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 56576514 - 56576421
Alignment:
Q  50 cctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatc 144  Q
    ||||||||||||||||||||| | |||||||| | ||| ||||| | |||| |||| || ||| ||| ||||||| ||||||| ||| |||||||    
T  56576514 cctagtaacccggagttcggccgggaggtaagtaaagtttggct-agaattattcccaccaggtatcaaactcgggttctctcgaacgattcatc 56576421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 12023712 - 12023834
Alignment:
Q  19 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 118  Q
    ||||||||||||||||| || |||| ||| | ||||||| | |||||||||   ||||||||| | || ||| | || |||||||||| | |||||||||    
T  12023712 gttaaccctccagttcctaggggaagggggctctagtaatctggagttcggtcatgaggtaagtacagcctgaccaagaattgttccacccaggaatcga 12023811  T
Q  119 actcggcttctctcaaacaattc 141  Q
    |||||| | ||| | ||||||||    
T  12023812 actcgggtcctcccgaacaattc 12023834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 22983526 - 22983454
Alignment:
Q  187 tcaagtgtttaactaactgatacttctccatcaagaa--gttctcaccttttaagagaaagatcattagattt 257  Q
    |||||||||||||||| |||| ||| |||||||||||   ||||||| ||| |||||||||||||| ||||||    
T  22983526 tcaagtgtttaactaaatgatccttttccatcaagaaattttctcacttttcaagagaaagatcatgagattt 22983454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 9553489 - 9553414
Alignment:
Q  29 cagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttcc 105  Q
    ||||||||||| |||||| |||||||||| ||||||||||| || ||||||||   |||||||| || |||||||||    
T  9553489 cagttcccagtcgaaaggatccctagtaatccggagttcggtag-gaggtaagtgaagtctggcgaagaattgttcc 9553414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 23767499 - 23767387
Alignment:
Q  49 ccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttg 148  Q
    |||| |||| |||||||||  | | ||||||||||||| ||| | || |||||||| | ||| ||||||||| ||| ||||||| ||  ||||||| |||    
T  23767499 ccctggtaatccggagttcatccgcgaggtaaggatagcctgacgaagaattgttctacctaagaatcgaacccgggttctctcgaatgattcatcattg 23767400  T
Q  149 gtgaagttcatta 161  Q
    |||||| ||||||    
T  23767399 gtgaagctcatta 23767387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 23796644 - 23796557
Alignment:
Q  74 gaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttggtgaagttcatta 161  Q
    ||||||||||||| ||| | || |||||||| | ||| |||||||||| || ||||||| ||  ||||||| ||||||||| ||||||    
T  23796644 gaggtaaggatagcctgacgaagaattgttctacctaagaatcgaacttggattctctcgaatgattcatcattggtgaagctcatta 23796557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 3683743 - 3683659
Alignment:
Q  84 tagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttggtgaagttcattaaccactt 168  Q
    |||| ||||||||| || ||||| | ||||||||| |||   |||||  |||||||||||  |||||||||||||||||||||||    
T  3683743 tagtttggctaatagttattccatcaaggaatcgatctcaagttctccgaaacaattcatttttggtgaagttcattaaccactt 3683659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 1908213 - 1908255
Alignment:
Q  126 ttctctcaaacaattcatcgttggtgaagttcattaaccactt 168  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||    
T  1908213 ttctctcaaacaattcatcattgatgaagttcgttaaccactt 1908255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 33677416 - 33677515
Alignment:
Q  23 accctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactc 122  Q
    ||||||| |||||||| |||| ||| ||||  ||| ||||||||||||  ||||||||| |||| | | |||| |||| ||||| | |||||||||||||    
T  33677416 accctccggttcccagaggaa-gggccccttttaatccggagttcggctatgaggtaagtatagcccgactaaaaattattccacccaggaatcgaactc 33677514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University