View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13260_high_21 (Length: 320)

Name: NF13260_high_21
Description: NF13260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13260_high_21
NF13260_high_21
[»] chr1 (1 HSPs)
chr1 (18-310)||(47253313-47253605)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 47253605 - 47253313
Alignment:
Q  18 gtatgagaatggaaagtcaaggttttaaactcctcaagctattattgttaacaactgagctacagctagttatttacggttaaactttttcaccgttgca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47253605 gtatgagaatggaaagtcaaggttttaaactcctcaagctattattgtcaacaactgagctacagctagttatttacggttaaactttttcaccgttgca 47253506  T
Q  118 gcaaattcttctccgagtctgcaaaataattaaccaagattttgacatgtatcactcatgtagggcccttatatgtactagacaacttagtctgtaacag 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47253505 gcaaattcttctccgagtctgcaaaataataaaccaagattttgacatgtatcactcatgtagggcccttatatgtactagataacttagtctgtaacag 47253406  T
Q  218 acaagagtaaagagctatgaaacaataacttaaatagtaccttctaattcagctattgggatagtgaagcatgtgtttgatttaagagtatta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47253405 acaagagtaaagagctatgaaacaataacttaaatagtaccttctaattcagctattgggatagtgaagcatgtgtttgatttaagagaatta 47253313  T

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